Cfag031930.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750816.1:922835-925583[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0011 0.069 14.6 1.1 1 23 23 45 23 45 0.96 2 14 0.00036 0.023 16.1 1.1 1 21 51 71 51 72 0.94 3 14 0.00036 0.023 16.1 1.1 1 21 100 120 100 121 0.94 4 14 0.00036 0.023 16.1 1.1 1 21 149 169 149 170 0.94 5 14 0.00036 0.023 16.1 1.1 1 21 198 218 198 219 0.94 6 14 0.00036 0.023 16.1 1.1 1 21 247 267 247 268 0.94 7 14 0.00036 0.023 16.1 1.1 1 21 296 316 296 317 0.94 8 14 0.00036 0.023 16.1 1.1 1 21 345 365 345 366 0.94 9 14 0.00036 0.023 16.1 1.1 1 21 394 414 394 415 0.94 10 14 0.00036 0.023 16.1 1.1 1 21 443 463 443 464 0.94 11 14 0.00036 0.023 16.1 1.1 1 21 492 512 492 513 0.94 12 14 0.00036 0.023 16.1 1.1 1 21 541 561 541 562 0.94 13 14 0.00036 0.023 16.1 1.1 1 21 590 610 590 611 0.94 14 14 0.00036 0.023 16.1 1.1 1 21 639 659 639 660 0.94
Sequence Information
- Coding Sequence
- ATGTCTAACGCGGCCCTGGAGAGGCATCAGCTCGGGCAGTGCAAGCGAGAGAAAAGCGGCAAGTCGTACAAGTGTCCCTCCTGCGACAAGATGTGCGCCACCAGGCAGGGGCTGCAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAGTGCTCGCAGTGCCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTGAGAACAAACAGACAGACCGGCACTACGTATATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAGTGCTCGCAGTGCCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTGAGAACAAACAGACAGACCGGCACTACGTATATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAGTGCTCGCAGTGCCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTGAGAACAAACAGACAGACCGGCACTACGTATATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAGTGCTCGCAGTGCCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGACACCACGCGACGGTGAGAACAAACAGACAGACCGGCACTACGTATATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAGTGTTCGCAGTGCCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTGAGAACAAACAGACAGACCGGCACTACGTATATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAGTGCTCGCAGTGCCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTGAGAACAAACAGACAGACCGGCACTACGTATATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAGTGCTCGCAGTGCCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTGAGAACAAACAGACAGACCGGCACTACGTATATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAGTGCTCGCAGTGCCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGACACCACGCGACGGTGAGAACAAACAGACAGACCGGCACTACGTATATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAGTGTTCGCAGTGCCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTGAGAACAAACAGACAGACCGGCACTACGTATATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAGTGCTCGCAGTGCCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTGAGAACAAACAGACAGACCGGCACTACGTATATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAGTGCTCGCAGTGCCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGACACCACGCGACGGTGAGAACAAACAGACAGACCGGCACTACGTATATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAGTGTTCGCAGTGCCCGCAGCAGTTCAGGCAGGCGGGCGCGCTTAAGCGGCACCACGCGACGGCaagaacagacagacagaccggCACTACGTATATAGTCTATATACAGCTGCACGTGACGCTACACGGGGGGGAGAAGCCGCACAAGTGCTCGCAGTGCCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGATAAGATAA
- Protein Sequence
- MSNAALERHQLGQCKREKSGKSYKCPSCDKMCATRQGLQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTNRQTGTTYIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTNRQTGTTYIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTNRQTGTTYIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTNRQTGTTYIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTNRQTGTTYIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTNRQTGTTYIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTNRQTGTTYIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTNRQTGTTYIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTNRQTGTTYIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTNRQTGTTYIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTNRQTGTTYIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATARTDRQTGTTYIVYIQLHVTLHGGEKPHKCSQCPQQFRQAGALKRHHATIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -