Cfag030320.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750814.1:6470831-6474887[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.3e-06 0.0004 21.7 1.3 1 23 172 194 172 194 0.96 2 14 0.00023 0.015 16.8 1.8 1 23 200 222 200 222 0.98 3 14 9.2e-06 0.00059 21.1 3.9 1 23 228 250 228 250 0.99 4 14 0.0013 0.083 14.4 2.9 1 23 283 305 283 305 0.97 5 14 0.00047 0.03 15.8 1.8 1 23 311 333 311 333 0.92 6 14 3.4e-06 0.00022 22.5 2.3 1 23 339 361 339 361 0.98 7 14 3.9e-05 0.0025 19.2 2.9 1 23 367 389 367 389 0.96 8 14 0.00075 0.048 15.1 2.5 1 23 395 418 395 418 0.91 9 14 0.0014 0.088 14.3 2.3 1 23 426 448 426 448 0.97 10 14 0.007 0.45 12.1 0.5 1 23 476 498 476 498 0.96 11 14 3.2e-06 0.0002 22.6 2.5 1 23 504 526 504 526 0.98 12 14 1.6e-06 0.0001 23.6 1.8 1 23 531 554 531 554 0.97 13 14 0.00012 0.0076 17.7 0.1 1 23 560 582 560 582 0.97 14 14 0.0037 0.24 12.9 0.6 1 23 588 611 588 612 0.91
Sequence Information
- Coding Sequence
- ATGGAGGAGTATTACTCATGTAGCTGCTGTCTGGTGCGCCCTCCGGACAAAGGCCTCAAGACTCTATACAATCATCTCGGCAAAGCAGAGATTTATTACGACATGCTGAGGGAATGCTTTGGTTTAAGTCTAAATTTAGTTAATGAGGAGTGCGGGATCTGCGAGGTGTGCGTGGGGCGACTGCGGGACGCGAGCGACTTCAAGCTGCAAGTGCAGCGCGTGCAGGACGTGCTGCACAAGCGGCTCACCGGAGCACTCCCTGCCATTGAGGGTGACAATTTCAACATCAAGTTAGAGAAACCTACTGGAGATGACGATATTTTGCGCGGGATCAAGCAGGAGAAGCTGGAGGTGGAGGTGGCTGACAGCAACTTCGTCTCAGTTACATTAGAGTCATTACACGAAAGTTCGCCAGCGCCTTTTGCTCAACCAGTTCCTTCCGCTTCTCACAGCGTCTCGTGCGCACCCACTCCAAACGTTACCAGGCGCCGCTTCCACCATGGAGACAAACCTTACGCGTGCAACATATGCAACAAAAGATTCGTACAGAAGGGCCATTTAAATGTTCATTACGCAAACCATATAGGAAAATTCAAATTCTCTTGCGAATTATGCAAAAGGGGATTCGTACAGAAATGTGATTATGTAATTCATATGCGGATacacactggtgaaaaaccATACGAATGTGATATTTGCAACAAGAAATATAGACATAAAGGCCAATTAAACCAACATAAAAATACTCATGTGAAATATGATCAGAATCGCGTAGAGCCAGGAGAAATAACTACATGCAAGAAAGAGTCGTCAGAAGAATTAGAAGATCGAGGACCCGCAAAATGTTTTACGTGTGATATATGCAAAAAGCAATTTGTTGATAAAACCTATTTAGACGCCCATTCCAAACATCACTCTGGAGATTATCCGTTCACTTGCGACATTTGTACAAGGAAATTTAATACGCAGTTTGCTTTGAAAACTCATAAAGTTGATCATTTGGGAGGGAGACCTTTTAAGTGTGAAAAATGTAATAAACGGTACACAACGAAAAGTACTTTAGCTCTACATTTGAAAGTTCACAATGAAGATTATAAGCACGCATGTCATCTGTGTAGTAAACGATTCATAACAAAGGAGACTTTAAATGTACATATGCTCGTACACACGGGGGAAAGGCCTTATGCCTGTGTAACTTGTGGAACTAAGTTCCGGTATAGAAAAAGCTTGAAGAAACATTTATTTGAGAAACACAACCAAGTTACGGACAAACAATTCTGTTGTGATACTTGTGGGAAACGATTTGCATTACAGGAGATTTTAGTAAAACATATGAAGAAACACGAAGTCCAGACTGAGAAGGAAAGGATGAAGAAGGAAAAGGAGAAGAAGAAGGACCCCGCTGATAAAAAGAAAGAACTAGCATTTATGTGTGAAGTATGTAGCAAGCGATTTACGactataggtattttaaataatCATAGAGTTACACATAATGAAGAAAAACCTTTCGAGTGCGACGTATGTCATAAAAAATACCGAAAGAAGGGAAATTTACAGGACCACATGCAGGTGCACGAGGAAAAAAAACACTCGTGTGAAGTATGCGGCCAGCCATTCAGACATAAGTCTGCCTTGAATGTTCATATCCGACGGATGCACGAGGAAAACAGACCACATGTTTGCGATATTTGTAATAAGGCTTTTGTAGTTCTTGCTGAACTTAAAGTTCATAATCGTATACACACTGGGGAGAAACCGTTTGCTTGCGAAATATGTTGGAAGAAATTTGAGCGCCCTGGTAGAGTTAAGAAACATCTTGTAAATGTCCACCACGAGAAACCTACGAGATTTGTTAAGTTAAaagaattgtattaa
- Protein Sequence
- MEEYYSCSCCLVRPPDKGLKTLYNHLGKAEIYYDMLRECFGLSLNLVNEECGICEVCVGRLRDASDFKLQVQRVQDVLHKRLTGALPAIEGDNFNIKLEKPTGDDDILRGIKQEKLEVEVADSNFVSVTLESLHESSPAPFAQPVPSASHSVSCAPTPNVTRRRFHHGDKPYACNICNKRFVQKGHLNVHYANHIGKFKFSCELCKRGFVQKCDYVIHMRIHTGEKPYECDICNKKYRHKGQLNQHKNTHVKYDQNRVEPGEITTCKKESSEELEDRGPAKCFTCDICKKQFVDKTYLDAHSKHHSGDYPFTCDICTRKFNTQFALKTHKVDHLGGRPFKCEKCNKRYTTKSTLALHLKVHNEDYKHACHLCSKRFITKETLNVHMLVHTGERPYACVTCGTKFRYRKSLKKHLFEKHNQVTDKQFCCDTCGKRFALQEILVKHMKKHEVQTEKERMKKEKEKKKDPADKKKELAFMCEVCSKRFTTIGILNNHRVTHNEEKPFECDVCHKKYRKKGNLQDHMQVHEEKKHSCEVCGQPFRHKSALNVHIRRMHEENRPHVCDICNKAFVVLAELKVHNRIHTGEKPFACEICWKKFERPGRVKKHLVNVHHEKPTRFVKLKELY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00410540;
- 90% Identity
- -
- 80% Identity
- -