Cfag030725.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750814.1:8322499-8327018[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0056 0.36 12.4 0.7 1 23 28 51 28 51 0.95 2 24 0.49 31 6.3 0.1 2 23 77 99 76 99 0.89 3 24 0.065 4.2 9.0 3.0 2 23 123 144 122 144 0.97 4 24 0.002 0.13 13.8 0.5 1 23 148 170 148 170 0.97 5 24 0.0084 0.54 11.8 0.5 1 23 177 200 177 200 0.97 6 24 0.0034 0.22 13.1 1.3 2 23 208 230 207 230 0.95 7 24 0.00058 0.037 15.5 1.2 1 23 327 350 327 350 0.94 8 24 0.0052 0.34 12.5 1.2 2 23 422 443 421 443 0.96 9 24 0.018 1.2 10.8 0.2 1 23 447 469 447 469 0.98 10 24 0.0063 0.4 12.2 0.7 1 23 474 497 474 497 0.96 11 24 1.1 68 5.2 4.3 2 23 504 526 503 526 0.91 12 24 2.5e-05 0.0016 19.8 0.3 2 23 534 556 533 556 0.97 13 24 0.021 1.3 10.6 3.4 1 23 562 584 562 584 0.97 14 24 0.0056 0.36 12.4 0.7 1 23 590 612 590 612 0.99 15 24 0.0056 0.36 12.4 0.5 1 23 685 708 685 708 0.92 16 24 0.32 20 6.9 0.1 2 23 738 760 737 760 0.88 17 24 0.077 4.9 8.8 0.8 2 23 783 804 782 804 0.94 18 24 0.00074 0.047 15.2 0.3 1 23 808 830 808 830 0.98 19 24 0.00066 0.042 15.3 0.3 2 23 836 858 836 858 0.96 20 24 1.8 1.2e+02 4.5 0.5 2 23 866 888 865 888 0.93 21 24 0.0019 0.12 13.8 0.3 2 23 896 918 895 918 0.94 22 24 0.0032 0.21 13.1 3.5 1 20 924 943 924 946 0.92 23 24 5.7e-05 0.0036 18.7 1.4 1 23 952 974 952 974 0.99 24 24 0.00091 0.058 14.9 3.3 1 23 980 1003 980 1003 0.97
Sequence Information
- Coding Sequence
- ATGCAGAAACAGTGGCACAACCTAACGACCTTGCTCAAGTACACTAACGCAACACCCTTCAAAGACAGGAACGATGCGGGCTACATATGCGCGTACTGTTTCAAAACGTACCCCGACCCCGAGGTCCTGCGGCACCACACGCAGAATGACCACGTTAAAGAGAAACCCACCTATAAGGCCGGCTCCGGTATGAGCAGCTTCGTCGCTTTCCTCGACATTGTCGACCTCAAATGCACTCTCTGCAATCTACCCTTTGAAAACTTAAAAGATCTCCCCGAACATCTAGTCAAAGTTCACGACAAGAAATACTTCTTGGGCGTCACCGATTACTTCCAACCGTTCAAGCTGACTAACGAGCAACAGATCAAATGCTGCCTGTGCAACGAAGCATATCATAACATGAAGTTGCTCATGCAACATATGAACGTCCATTACAGAAACTTTATCTGCACAACCTGCGGAGCCGGATTTGTTAACAGCTTTAGACTTAACAGGCATGAGACCACGCACGGCAAGAAGAAATCCAGCTTTCCGTGCAGACATTGCGGTCAGGTGTTTGCGGCAGAGTCGAAGAAGAAAGCTCATGTTAATACTGAACATAAAGGCATAGCCGGAGACAGCGTGTGCCAAATATGCAAGGCGCGTTTCAAGAACTACTATCAGAAAACTAGACATATGATGCAAGTCCACAATGTTGAGGGTCTCACGAAGAAATCTTTCGTGAAAGTTAAATCGACACCGAAGAATCAAAGAAAGACTTCCAGTAATATTGCTAGCGCTGTGAAAGCAGGAAAAGCACAACCGTTAAAGGGTGAGGTCCGAAAGAATGAAAGAGTCACAATAAGAAAACGTGCCGATAAGAATAAGACAAAAGAGAAAGATCAGAAGCCTATTGAGATACACATGCATCGTAACAATATTAGAGAGATTTTGGCCAGTTCCAACGCTACTCCAATTCGTTGTCATGGCGATATCGGCTATACGTGTTGCTTCTGTCCGAAGCAGTTCCCAAGCCCCGCAGACCTCAAAAATCACACAATACAAGAACACGACCACAAAACCAAGCAAAACTTTATGCGAGGAGGGGTAATGCATTCGTACGTAGTTAAACTAGATATTACCTCCTTACGCTGTGAACTGTGTGCCAGTGACCAAGAAAGTCTAGATCAAATGGTTCACCATTTAATTGAACGTCACGGCAAGAAACTTTACACGGATATTAAGAATCATATTCTGCCTTTCAAGTTTGATGATGACAAATTGCGATGTGTCATGTGTAAGGTCGAATTTAATTCTTTCAAACATCTACAAGAACACATGATTGTGCATTTCAGGAACTATGTCTGTGGCATATGTGATAGTGGATTTATCAATCGAAGAATGCAGCGAGCCCACGCTAAAACACATTTAACCGGTAAATTCGTATGCAGCACGTGTTCTAAGGTGTTCGACACTGTACTGAAACTAAAATCGCACGAACGACAAGTCCACTCTACCATAAAGTATAACAAATGTGGTCACTGCAGCGAAAAATTCAAAGACTTTAAACATAAACTTAAGCATCTGGCAGACGTCCACGGGATTAAAAAGGAGAAATCGAAATGCAAAGCGTGCGATAAAGCTTTCAGTTCCCCATCAGCTCTTAGCGTTCACATTAAACGCAATCATTTAATAGAGAGACACCATAAATGTGATCAATGTGAAATGACATTCTACTCCATAAGAGAGTTGGAGCACCATCTGGTGAAACACTCCGGTACAAGAGAGTTCCAGTGCGATGtttgttataaatattatgGTCTGAGGAAAACTCTAGTCGAACACATGAGAATACATACGAATGATCGTCGATTCGAATGCCCGCACTGCGGTGACGCACGAAGAACTAGGATTATCACAATCGATGCAACTAATCAAAAAGCGGGTATCAAGCTTGATATCTTGCGTCTGCCCAAGGTCGGCCCCAGTGAGACGAGGAAGAACCTGCATAATCTAGGTCAGATTTTACTCAATTCTAATGCGAGTCCAATAAAAGCCCACGATCTGCGGGGGTACATGTGTGCTTTTTGCCCAAAACGGTTTCCCGAACCgcaaaaactaaaaaaacattttctcGAAGAGCACAATGATGACAATTTGATAAGGCGCATGTCTGGCATGTCGGGCTCTCCGCTCTCCACCCACGTTGTGAAATTAGACATTACGCTTCTGAACTGCGCTCTGTGCGACACTGACTTCGACACACTAGAGGACTTTACACTTCACCTAGTAGAGGTACACAATAAAAAATTGTACACTGATGTACGTAATCAGTTGCTGCCTTTCAAATTTGACACGCCGGAGTTGTGTTGCGCAATCTGCTCGGTGACGTATGGCAGCTTCAAACTCCTGCAGCAACACATGAATGCGCATTTCAGAAACTATATATGCAAAATTTGCAACGCTGGCTTCGTAGTCGAGCGACTTCTGGCGCATCACATCCGCCGGCATGGTGACGAAAAAGGTGAATGTCCCGAATGTGGAAAGGCTTTCACCAATACGCTGAAAATGCGTGAGCACGTGAAACGTGTGCACATGGGCTTAGATAAGCGGAACAAATGCCAATTCTGCGAGGAGAAGTTTGTAGACTATTGGAAGAAGGTCGACCATATGGTCAAGGAGCACGGAGTTCCCTCGGTAGTCCTGAGCTGCGGGGCGTGCGAGCGTACTTTTGCTAACCAACGAGCACTGGCTCGGCACACAAAGAAGGATCATCTCATGGAACGGAAACATAAATGTTCTTATTGTGAAATGAAATTTTTCAGCTCGAGTGCGCTTAAGAAACATTTACCTAAACATACGGGTATAAAGAATTTCAAATGCGAAGTGTGTTCCAAAGAGTATGGTAGAAAGTCGACTCTAAGGGAACACAAGCGGATACACACCGACGACAGGAGGTTTTCGTGTGCTCACTGCGGGCTAGCATTCATACAGAAGTGTAGCTTGAAGGGGCATTTGCGATCAAAGCACGGCGAGAACGTTTAA
- Protein Sequence
- MQKQWHNLTTLLKYTNATPFKDRNDAGYICAYCFKTYPDPEVLRHHTQNDHVKEKPTYKAGSGMSSFVAFLDIVDLKCTLCNLPFENLKDLPEHLVKVHDKKYFLGVTDYFQPFKLTNEQQIKCCLCNEAYHNMKLLMQHMNVHYRNFICTTCGAGFVNSFRLNRHETTHGKKKSSFPCRHCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGLTKKSFVKVKSTPKNQRKTSSNIASAVKAGKAQPLKGEVRKNERVTIRKRADKNKTKEKDQKPIEIHMHRNNIREILASSNATPIRCHGDIGYTCCFCPKQFPSPADLKNHTIQEHDHKTKQNFMRGGVMHSYVVKLDITSLRCELCASDQESLDQMVHHLIERHGKKLYTDIKNHILPFKFDDDKLRCVMCKVEFNSFKHLQEHMIVHFRNYVCGICDSGFINRRMQRAHAKTHLTGKFVCSTCSKVFDTVLKLKSHERQVHSTIKYNKCGHCSEKFKDFKHKLKHLADVHGIKKEKSKCKACDKAFSSPSALSVHIKRNHLIERHHKCDQCEMTFYSIRELEHHLVKHSGTREFQCDVCYKYYGLRKTLVEHMRIHTNDRRFECPHCGDARRTRIITIDATNQKAGIKLDILRLPKVGPSETRKNLHNLGQILLNSNASPIKAHDLRGYMCAFCPKRFPEPQKLKKHFLEEHNDDNLIRRMSGMSGSPLSTHVVKLDITLLNCALCDTDFDTLEDFTLHLVEVHNKKLYTDVRNQLLPFKFDTPELCCAICSVTYGSFKLLQQHMNAHFRNYICKICNAGFVVERLLAHHIRRHGDEKGECPECGKAFTNTLKMREHVKRVHMGLDKRNKCQFCEEKFVDYWKKVDHMVKEHGVPSVVLSCGACERTFANQRALARHTKKDHLMERKHKCSYCEMKFFSSSALKKHLPKHTGIKNFKCEVCSKEYGRKSTLREHKRIHTDDRRFSCAHCGLAFIQKCSLKGHLRSKHGENV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -