Cfag031934.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia fagiglandana
Gene Symbol
-
Assembly
GCA_963556715.1
Location
OY750816.1:964570-983453[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.00083 0.053 15.0 0.3 1 23 255 277 255 277 0.98
2 26 0.44 28 6.4 1.6 1 23 284 306 284 306 0.93
3 26 0.76 49 5.7 0.6 3 23 340 360 339 360 0.96
4 26 1 64 5.3 1.7 1 23 364 386 364 386 0.92
5 26 0.00076 0.049 15.1 3.8 1 23 391 414 391 414 0.96
6 26 0.11 6.8 8.4 0.1 3 23 421 442 420 442 0.94
7 26 0.11 6.8 8.4 0.1 3 23 470 491 469 491 0.94
8 26 0.11 6.8 8.4 0.1 3 23 519 540 518 540 0.94
9 26 0.11 6.8 8.4 0.1 3 23 568 589 567 589 0.94
10 26 0.11 6.8 8.4 0.1 3 23 617 638 616 638 0.94
11 26 0.11 6.8 8.4 0.1 3 23 666 687 665 687 0.94
12 26 0.11 6.8 8.4 0.1 3 23 715 736 714 736 0.94
13 26 0.11 6.8 8.4 0.1 3 23 764 785 763 785 0.94
14 26 0.11 6.8 8.4 0.1 3 23 813 834 812 834 0.94
15 26 0.036 2.3 9.8 0.0 2 19 844 861 843 862 0.95
16 26 0.014 0.88 11.2 0.0 3 23 871 892 870 892 0.93
17 26 0.00032 0.021 16.3 2.6 1 23 897 920 897 920 0.97
18 26 1.4 89 4.8 0.6 3 14 948 959 947 963 0.85
19 26 1.4 89 4.8 0.6 3 14 979 990 978 994 0.85
20 26 0.00067 0.043 15.3 0.3 3 23 1010 1030 1009 1030 0.97
21 26 3.1e-05 0.002 19.5 0.1 1 23 1036 1058 1036 1058 0.98
22 26 0.0043 0.28 12.7 0.1 1 21 1063 1083 1063 1088 0.92
23 26 0.0043 0.28 12.7 0.1 1 21 1108 1128 1108 1133 0.92
24 26 0.28 18 7.1 0.0 1 17 1149 1165 1149 1166 0.91
25 26 0.00018 0.011 17.1 0.3 1 23 1181 1203 1181 1203 0.97
26 26 0.011 0.68 11.5 3.7 1 23 1209 1232 1209 1233 0.96

Sequence Information

Coding Sequence
ATGAATACAATTCAAGAAGAAACCTCTAATCCTTCGTTAAAGCTGCTAAGCTGTCGAGCTTGCCTAGCTACCGATATTAAATTGTTTAATATATACGAAAACAAACTCGCTGAAGCTTTTGCTCATATCACAGGGAGTCCCGTGCTCTTATCAGACGGGTTGCCGCAGCACTTATGCAGCTACTGTCGTAGCACTCTGCTCAAATGCAGAGTGTTCAGGGCCCGGAGCCTCCGTGCACAGCATTGCCTTAGGGCAGTCCCTTTGCAAATTGAGCTAACCACAGACTATATCAGAACCATAGACCGCCACTCTCACCAGCTCATCTACTTAACACAAACAAGAGTCGAGACCACAGACTATAGAGATATCCTTGAAGTGGATGTAAAAAAAGAAGAGTCAGACATAGACAATTTCATCCCAGAGTCTGATGATTTGAAAATAGAATATGAAATCAAAGATAAAATAGATGAAGGCATAGACAATGGAGATTTCAGTGATGATAATACAGAACAGATATTTGTAGCCACCAATCCGGTGAGAGATGTAAAAGTTAGAAAGGGAAGGAAGAAAAAAACGAAAGCAGAAGAGAAGAGAGTAAAAAAGAAGATAAAGAAGAGGACGTCAGATAATGATTATTTGCCAGATTTCGATTTTGCCAAGTTTGAAAGTAGTTATAGTGTTGAAATTATTGCTTTAACAAAGGAGCAACAATTAGAGGAGATTCGGGCGCGCAAGCAGAGCGCCAACTACCAGTACGCGGCGTACAAGTGCGAGGAGTGCGGGAAGGGGTTCATGGCCAACGACGCTTATAACAACCACAAGATACGGCACAGCCCGAGCATGGGCGCGCACGCGTGCGAGATCTGCCTGGTGCGGTTCAAGCGGCAATCTCGCCGCCAGGAGCACCAGGACCTGCACCGGCTCAAGTTCCTCTGTAAGGAGTGCAGCTTCGTATCTAGGAACAGGTCGGTTATTCATCTCATACCGTATTGCGCCTGTCTTGTAACAGAGCATGGGTGCGAGATCTGCCTGGTGCGGTTCAAGCGGCAATCTCGCCGCCAGGAGCACCAGGATCTGCACCGGCTCCAGTTCCTCTGCAAGGAGTGCAGCTTCGTATCTAGGAACAGGTATCAAGCGAAGAAGCATTTCGAGTGGCACTCTGGCAAGATCCACGTCTGCAAACACTGCGGTGCCAGTTTTACCAAGAGTTCAACATACTTGTCGCACGTGCGGCTCCAGCATCCTGCGATGAATGTGGCATGCGACGTGTGCGGCGAGACGTTCGTGGGACGACTGGGACTGTTGCAACACAAGTCACGAGCACACCAGGtagggtcgccatgtgagggAGTTAGCTCGACACACTTGTCGCACGTGCGGCTCCAGCATCCTGCGATGAATGTGGCATGCGACGTGTGCGGCGAGACGTTCGTGGGACGACTGGGACTGTTGCAACACAAGTCACGAGCACACCAGGTAGGGTCGCCGTGTGAGGGAGTTAGCTCGACACACTTGTCGCACGTGCGCCTCCAGCATCCTGCGATGAATGTGGCATGCGACGTGTGCGGCGAGACGTTCGTGGGACGACTGGGACTGTTGCAACACAAGTCACGAGCACACCAGGtagggtcgccatgtgagggAGTTAGCTCGACACACTTGTCGCACGTGCGGCTCCAGCATCCTGCGATGAATGTGGCATGCGACGTGTGCGGCGAGACGTTCGTGGGACGACTGGGACTGTTGCAACACAAGTCACGAGCACACCAGGTAGGGTCGCCGTGTGAGGGAGTTAGCTCGACACACTTGTCGCACGTGCGCCTCCAGCATCCTGCGATGAATGTGGCATGCGACGTGTGCGGCGAGACGTTCGTGGGACGACTGGGACTGTTGCAACACAAGTCACGAGCACACCAGGTAGGGTCGCCGTGTGAGGGAGTTAGCTCGACACACTTGTCGCACGTGCGCCTCCAGCATCCTGCGATGAATGTGGCATGCGACGTGTGCGGCGAGACGTTCGTGGGACGACTGGGACTGTTGCAACACAAGTCACGAGCACACCAGGtagggtcgccatgtgagggAGTTAGCTCGACACACTTGTCGCACGTGCGGCTCCAGCATCCTGCGATGAATGTGGCATGCGACGTGTGCGGCGAGACGTTCGTGGGACGACTGGGACTGTTGCAACACAAGTCACGAGCACACCAGGTAGGGTCGCCGTGTGAGGGAGTTAGCTCGACACACTTGTCGCACGTGCGCCTCCAGCATCCTGCGATGAATGTGGCATGCGACGTGTGCGGCGAGACGTTCGTGGGACGACTGGGACTGTTGCAACACAAGTCACGAGCACACCAGGtagggtcgccatgtgagggAGTTAGCTCGACACACTTGTCGCACGTGCGGCTCCAGCATCCTGCGATGAATGTGGCATGCGACGTGTGCGGCGAGACGTTCGTGGGACGACTGGGGTTACTACAACACAAGTCACGAGCGCATCAGGTGACAGTGGTGAAGGCGGAGTCTCGCTGCGCGGAGTGCGGCGCGCAGTTCGAGAGCGCGGAGGCGCTGACCAGACACACCCCCTGCGACCCACATGCCAGACCCTGTCTGGTGTGTGGCGAGACATTGTCGACAGAAGATGAATTACAAGCACACGCCAAGGAACGACACAGCATGGATCAATTCAAATGTGTACAGTGTGACAAAACATTCGCCAGCTCTAAATCGTACGAGGTGCACCACCAGCGCGTGCACCTCAACGTGCGCTGGCGCAAGTCGCGCGAGCAGCGAGCGCGGCGCACTCACACTGACCCGCCCAAGCGCAAGGAGGCCATGTGCGAGGTGTGCGGCAAGGCGTGCGAGCGCAAGTCGCGCGTGCAGCGAGCGCGGCGCACTCACAGCGACCCGCCCAAGCGCAAGGAGGCCATGTGCGAGGTGTGCGGCAAGGCGTGCGAGCGCAAGTCGCGCGTGCAGCGAGCGCGGCGCACTCACACTGACCCGCCCAAGCGCAAGGAGGCCATGTGCGAGGTGTGCGGCAAGGCGTGCGAGTCGAACGCAGCGTTGGTGTACCACCAGCGCTCCCACACGGGCGAGCGGCCCTACAAGTGCGCGCAGTGCCCCAAGTCCTTCACAATGCCGCAGGCCCTCATAAATCACCAGCTGGTGCACTCGGAGGAGCGGTACGCGTGCTCCGCGTGCCCGAAGGCCTTCAAGCAGAAAGTGGCGCTGCAACTGCACAGCCgggtaacatacatacatacatacatacataatcttGGACAGAATCACCAGCTGGTGCACTCGGACGAGCGACCGTACGCGTGCTCCGCGTGCCCGAAGGCCTTCAAGCAGAAAGTGGCGCTGCAACTGCACAGCCgggtaacatacatacataatcttGGACAGAATCACCAGCTGGTTCGCTCGGACGAGCGTCCGTACGCGTGCTCCGCGTGCCCGAAGGCCTTCAGGCAGAAAGTGGCGCTGCAACTGATCAGCCggAGTCACCAGCTGGTGCACTCGGAGGAGCGGCCGTACGCGTGCTCCGCGTGCCCGAAGACCTTCAAGCAGAAAGTGGCGCTGCAACTCCACAGCCGGGTCCACACCGGCgagcgtccatacaaatgttcGCTATGCGACAGTTCGTTCAAGCAGGGCCCTCACCTCCGCACCCACGTCAAGCTGATGCACCACGCGCCGGAGCGCCGGCCGCGACGCAAGCCCTAG
Protein Sequence
MNTIQEETSNPSLKLLSCRACLATDIKLFNIYENKLAEAFAHITGSPVLLSDGLPQHLCSYCRSTLLKCRVFRARSLRAQHCLRAVPLQIELTTDYIRTIDRHSHQLIYLTQTRVETTDYRDILEVDVKKEESDIDNFIPESDDLKIEYEIKDKIDEGIDNGDFSDDNTEQIFVATNPVRDVKVRKGRKKKTKAEEKRVKKKIKKRTSDNDYLPDFDFAKFESSYSVEIIALTKEQQLEEIRARKQSANYQYAAYKCEECGKGFMANDAYNNHKIRHSPSMGAHACEICLVRFKRQSRRQEHQDLHRLKFLCKECSFVSRNRSVIHLIPYCACLVTEHGCEICLVRFKRQSRRQEHQDLHRLQFLCKECSFVSRNRYQAKKHFEWHSGKIHVCKHCGASFTKSSTYLSHVRLQHPAMNVACDVCGETFVGRLGLLQHKSRAHQVGSPCEGVSSTHLSHVRLQHPAMNVACDVCGETFVGRLGLLQHKSRAHQVGSPCEGVSSTHLSHVRLQHPAMNVACDVCGETFVGRLGLLQHKSRAHQVGSPCEGVSSTHLSHVRLQHPAMNVACDVCGETFVGRLGLLQHKSRAHQVGSPCEGVSSTHLSHVRLQHPAMNVACDVCGETFVGRLGLLQHKSRAHQVGSPCEGVSSTHLSHVRLQHPAMNVACDVCGETFVGRLGLLQHKSRAHQVGSPCEGVSSTHLSHVRLQHPAMNVACDVCGETFVGRLGLLQHKSRAHQVGSPCEGVSSTHLSHVRLQHPAMNVACDVCGETFVGRLGLLQHKSRAHQVGSPCEGVSSTHLSHVRLQHPAMNVACDVCGETFVGRLGLLQHKSRAHQVTVVKAESRCAECGAQFESAEALTRHTPCDPHARPCLVCGETLSTEDELQAHAKERHSMDQFKCVQCDKTFASSKSYEVHHQRVHLNVRWRKSREQRARRTHTDPPKRKEAMCEVCGKACERKSRVQRARRTHSDPPKRKEAMCEVCGKACERKSRVQRARRTHTDPPKRKEAMCEVCGKACESNAALVYHQRSHTGERPYKCAQCPKSFTMPQALINHQLVHSEERYACSACPKAFKQKVALQLHSRVTYIHTYIHNLGQNHQLVHSDERPYACSACPKAFKQKVALQLHSRVTYIHNLGQNHQLVRSDERPYACSACPKAFRQKVALQLISRSHQLVHSEERPYACSACPKTFKQKVALQLHSRVHTGERPYKCSLCDSSFKQGPHLRTHVKLMHHAPERRPRRKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-