Basic Information

Insect: Cydia fagiglandana
Gene Symbol: -
Assembly: GCA_963556715.1
Location: OY750814.1:6411044-6414847[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00066 0.043 15.3 7.6 1 23 172 194 172 194 0.98

2 15 4.1e-06 0.00026 22.2 3.3 1 23 200 222 200 222 0.96

3 15 6.8e-05 0.0044 18.4 0.4 1 23 228 250 228 250 0.98

4 15 5.3e-07 3.4e-05 25.0 1.3 1 23 256 278 256 278 0.98

5 15 1.9e-06 0.00012 23.3 2.3 1 23 310 332 310 332 0.98

6 15 0.00071 0.046 15.2 1.3 1 23 338 360 338 360 0.95

7 15 5e-05 0.0032 18.8 1.5 1 23 366 388 366 388 0.98

8 15 1.6e-06 0.00011 23.5 0.4 1 23 394 416 394 416 0.98

9 15 0.0014 0.089 14.3 2.2 1 23 422 445 422 445 0.96

10 15 6.5e-06 0.00042 21.6 1.7 1 23 453 475 453 475 0.97

11 15 0.00012 0.008 17.6 1.2 1 23 496 518 496 518 0.97

12 15 0.00096 0.062 14.8 3.4 1 23 524 546 524 546 0.98

13 15 5e-06 0.00032 22.0 2.1 1 23 552 575 552 575 0.96

14 15 9.8e-05 0.0063 17.9 0.1 1 23 581 603 581 603 0.96

15 15 0.003 0.19 13.2 2.6 1 23 609 632 609 633 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00066	0.043	15.3	7.6	1	23	172	194	172	194	0.98
2	15	4.1e-06	0.00026	22.2	3.3	1	23	200	222	200	222	0.96
3	15	6.8e-05	0.0044	18.4	0.4	1	23	228	250	228	250	0.98
4	15	5.3e-07	3.4e-05	25.0	1.3	1	23	256	278	256	278	0.98
5	15	1.9e-06	0.00012	23.3	2.3	1	23	310	332	310	332	0.98
6	15	0.00071	0.046	15.2	1.3	1	23	338	360	338	360	0.95
7	15	5e-05	0.0032	18.8	1.5	1	23	366	388	366	388	0.98
8	15	1.6e-06	0.00011	23.5	0.4	1	23	394	416	394	416	0.98
9	15	0.0014	0.089	14.3	2.2	1	23	422	445	422	445	0.96
10	15	6.5e-06	0.00042	21.6	1.7	1	23	453	475	453	475	0.97
11	15	0.00012	0.008	17.6	1.2	1	23	496	518	496	518	0.97
12	15	0.00096	0.062	14.8	3.4	1	23	524	546	524	546	0.98
13	15	5e-06	0.00032	22.0	2.1	1	23	552	575	552	575	0.96
14	15	9.8e-05	0.0063	17.9	0.1	1	23	581	603	581	603	0.96
15	15	0.003	0.19	13.2	2.6	1	23	609	632	609	633	0.95

Sequence Information

Coding Sequence: ATGGAGGAGTATCATTCATGTAGCTGCTGCCTGGTGCGCCCTCCGGAAAAAGGCCTCAAAACGCTGTATAAACATCTCGGTAGAACAGAGGTTTATTTCGATATGCTGAAAGACTGTTTCGATATAAGTCTAAGTTTAGGAAATGACGAGTGCGGGATCTGCGAGGTGTGCGTGGGCCGGCTGCGGGACGCGAATGACTTTAAGCTGCAAGTGAAGCGCAGCCAAGCCGAGCTGCACGATCGGCTCAAGGGAGTACTCTCTGCAAGTGATAAGTTAAAAATCAAGTTAGAGAAAGCTACTGGAGATGACGCCATTTCGAGTGAAATCAAACTGGAAAAGTCAGAGGTGGAGATGGCTGATGGCGAGGTTGTATCAGTTGCATTATACGGAGGACCGCCAGCACCTTCGGCCCAACCGGTTCCTAGCGCGTCCAGCAGCGTTTCGTTCGCACCAGCTCCAAGTGTTACCAACCTGGACACCACCAAGCCGGCTTCGGCTTCCAAACGTGGCACACACACGTGCGACATATGTCACAAAACATTCGACCACCAAGCTCGGCTCAAACTTCATCGCCGCTCACACACTGGCGAGAAACCGTACTCGTGCAACGTTTGCGACAAAAGATTTGTACAAAAGAGCCATTTAAATACTCATTACGCATACCACATGGGAAAATTCAAGTTTTCCTGCGAACTATGCGATACACGATTCACTCAAAAAAATCAATGGGTCATACATATGCTAATacacactggtgaaaaaccATTCGAATGTGATATATGCAATAAAAAATTTAGACAAAAGGGCAACTTAAACGTTCATAAAAAAATTCATCTGAAATATGATTACAATCGCGTTGAGCCAGGAGAAATAACTGCATGTAAGAAAGAGTCGTCGGAAGAATCGAAAAATCAACCCGCAGAATATTTCACGTGTGATATATGCAAAAAGCGATTTGCAGAAAAAAGCAATTTAAACGCTCATATAAAACATCACTCTGGAGATTATCCGTTCACTTGTGACATTTGCGAAAGGAGATTCAATACGCAGTCTCGCTTGGATAATCATAAACTGGATCACACGGGAGGAAAACCTTTTAAATGTGATGAATGCAGTAAACAATACACGTCGAAAAGTGCTTTAAGACTTCATTCAAAAATACATACTGGGGATTATAGATACGCGTGCGATGTATGTAATAAACGTTTCATACAAAAAGATGTTTTAAGACAACATATGCGAGTACATACAGGTGAAAAGCCTTATAACTGTGAAATATGCCAAAGGAGGTTCCCATATAGATGTGGCTTAAAGAGTCATTTGTTAGTTAAACACAACCAGGTTATGGACAAACAATTTTGTTGTGATATTTGTGGGAAGCGATTTGCACTTCAGGGGACTCTAGTCAAACATATGAATAAACACGCTGAGAAGGCAAGGGGAGACAAGGCTAGACAGGAAGGAAGGATGGAAGACCTAAAACCATTTATGTGTGAAATATGTAGCAAACGATTTTCCACAAAAAGTATTTTAAGGAATCATAGAGAAATACATAATGAAGAAAGACCTTTCGAGTGTGAAGCGTGTCACAAAAAATTCCAAATGAAGAAATATTTACAAGATCACATGAAAGTGCATGATGATTTTAAGCAGCATGCATGTGAAGTATGCGGCCAACAATTCAGGCATAAATCTGCCTTAACAGTTCATATCCGACGAATGCACACCGAAAACAGACCCCATGCTTGCGATGTTTGTAAAAAGGCTTTTCCAGTACTTGCTGAATTAAAAGCGCATTATCGGGTGCACACTGGTGAGAGACCGTATGCTTGCGAGATATGCTATAAGAAATTTCCACGACATAATGGTGTTAAAAGACATCTTATACGAGTTCACCATGAGAAACCTtcgaaatttattaaattaaaggaaTTTAACAATATCAGTTGA
Protein Sequence: MEEYHSCSCCLVRPPEKGLKTLYKHLGRTEVYFDMLKDCFDISLSLGNDECGICEVCVGRLRDANDFKLQVKRSQAELHDRLKGVLSASDKLKIKLEKATGDDAISSEIKLEKSEVEMADGEVVSVALYGGPPAPSAQPVPSASSSVSFAPAPSVTNLDTTKPASASKRGTHTCDICHKTFDHQARLKLHRRSHTGEKPYSCNVCDKRFVQKSHLNTHYAYHMGKFKFSCELCDTRFTQKNQWVIHMLIHTGEKPFECDICNKKFRQKGNLNVHKKIHLKYDYNRVEPGEITACKKESSEESKNQPAEYFTCDICKKRFAEKSNLNAHIKHHSGDYPFTCDICERRFNTQSRLDNHKLDHTGGKPFKCDECSKQYTSKSALRLHSKIHTGDYRYACDVCNKRFIQKDVLRQHMRVHTGEKPYNCEICQRRFPYRCGLKSHLLVKHNQVMDKQFCCDICGKRFALQGTLVKHMNKHAEKARGDKARQEGRMEDLKPFMCEICSKRFSTKSILRNHREIHNEERPFECEACHKKFQMKKYLQDHMKVHDDFKQHACEVCGQQFRHKSALTVHIRRMHTENRPHACDVCKKAFPVLAELKAHYRVHTGERPYACEICYKKFPRHNGVKRHLIRVHHEKPSKFIKLKEFNNIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00871556;
90% Identity: iTF_00412732;
80% Identity: -