Cfag030713.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750814.1:8211397-8217698[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.39 25 6.6 0.6 3 23 81 101 79 101 0.97 2 29 0.034 2.2 9.9 0.0 2 23 129 151 128 151 0.94 3 29 0.00016 0.01 17.3 1.0 2 23 172 194 171 194 0.96 4 29 0.00033 0.021 16.3 1.6 2 23 200 222 199 222 0.92 5 29 0.00016 0.011 17.2 3.0 1 23 227 250 227 250 0.95 6 29 0.19 12 7.6 4.8 1 23 327 350 327 350 0.96 7 29 0.044 2.8 9.6 0.1 2 23 378 400 377 400 0.95 8 29 0.1 6.7 8.4 0.3 3 23 424 445 424 445 0.96 9 29 0.38 24 6.6 0.1 3 23 452 473 450 473 0.93 10 29 0.088 5.6 8.6 0.6 1 23 478 501 478 501 0.96 11 29 0.092 5.9 8.6 0.2 2 23 507 529 506 529 0.93 12 29 0.047 3 9.5 0.1 3 23 745 766 743 766 0.94 13 29 0.00042 0.027 15.9 0.3 2 23 772 794 771 794 0.92 14 29 0.0021 0.13 13.7 1.8 1 23 799 822 799 822 0.93 15 29 0.00011 0.0069 17.8 3.8 1 23 826 849 826 849 0.97 16 29 0.0085 0.54 11.8 0.1 1 23 896 918 896 918 0.95 17 29 0.02 1.3 10.7 1.2 2 23 989 1011 988 1011 0.94 18 29 0.0022 0.14 13.6 3.4 2 23 1017 1039 1016 1039 0.96 19 29 0.01 0.67 11.5 0.8 1 23 1044 1067 1044 1067 0.95 20 29 0.00035 0.023 16.2 1.7 3 23 1071 1092 1070 1092 0.97 21 29 0.041 2.7 9.7 4.3 1 23 1174 1197 1174 1197 0.97 22 29 1.9 1.2e+02 4.5 0.4 2 23 1225 1247 1224 1247 0.94 23 29 0.006 0.39 12.3 0.1 1 23 1269 1292 1269 1292 0.94 24 29 1.3e-05 0.00084 20.7 0.4 3 23 1299 1320 1298 1320 0.94 25 29 0.01 0.65 11.6 0.3 1 23 1326 1349 1326 1349 0.95 26 29 0.00013 0.0086 17.5 0.1 3 23 1356 1377 1355 1377 0.97 27 29 0.00045 0.029 15.8 4.3 1 23 1381 1404 1381 1404 0.97 28 29 0.14 9 8.0 0.2 2 23 1411 1432 1410 1432 0.96 29 29 0.069 4.4 9.0 1.6 1 23 1438 1460 1438 1460 0.96
Sequence Information
- Coding Sequence
- ATGCATCAGAACGGTATCGGTTTCATACATTTAATATGGTTGCATTCACATTTCTCTGACGCCGTGTGTTGTGACGGCTTGTGTTGTGTCGCATCACAAGCGATCCCGGTCCGCGCCAGGACGGATATAAAACAGCGGTCAATCTGCGGGCCCAGCGCCACAGAGCGCAGGCGGCATAACCTCGTGATACTTTTCAACAACACCTCCGTCATACCGTTCAGAAGCGGCAGTCAGTATGGCTGCTTCTACTGCGGGGACAAATACCCGGATTACAAGGAATTCGTTAAACACACTAAATCCCACGGCATTTGCAATGTTAAACACAAGTCTTTGATAAACCAAAAGTTTGGTACGGTTGAAGTTAAGTTAGACATTTCCAACGTCACCTGTGAACTATGCGATGAACCATTTAATAACTTAGATGATATAATATCTCATTTAAACGCTAAACACGGTTTGCGTTATGATAGGGAAGTGCCAATGTCTTTATCCGCCTATAGACTAGTAGATCTCAAATGCACTGAATGCGGTAAGATGTTTGAATATTTCCGTAATTTAGTTATGCATGTGAGAAAGAATCATATGGAGAAACTGCTGCCTTGCGAGCAATGCGATAAAAGCTTTAACAAGAAGTCAGAGTTGATGGCTCATTGTAGAATATACCACAGGCGTGCGGGCTACCAGTGCGTAAAATGCGAACGATGCTTCCGAACCTCCAGCTTACTCCGACTCCATCTCATCAACACCCACGGCTCCTCTGAACGGAAATGCACTAGGATCCTTTCCAGTTTGCGAGCAAGAAACTCAATAATATCTGAAGACGCCTTAACACCATTCGAAGATTTAGAAGACTGCGAAATTGAAACGCAAAGGAAAAGACTGCGCGAAAGGAACGCTATAGCTAAAAAGAATAGAGAGAATATCGCTTGCATTTTAAACATGACTACGGCGATACCTTTCAAGTACTATCAGAATAGATTCACTTGTTTTCATTGCTCGAAAGACTTCAATGAGCATGAAGACATGCGAACACACACTCTTATGGAGCATCCGTTTTACGATTTAGAGAGAAAATGTCCGAAATCGCTCAAAGGCGTCAACTTGTGTATAAAACTCGATATATCATCTCTATCTTGTAGGATTTGCTTTGAGCCGTTTACAGATTTTGATTTGTTAGTCGATCATTTAATCATGAATCATAAAGCGAATTATGATAAAAATGTAACAGGGATTATGCAGCTTTTTAGACTTGAGAAGTACAATATGGGGTGCCCTCTCTGTCCTCAATCATTCTCTTATTTCAACATCCTCCTTAAGCATATGAATCAAGAACATTCAGCCAAAACGCATCTTTGTTCGAACTGCGGAGCGGTGTTCGCTAGCGAAGCTATTCTCACCATGCATATAGCTAGAATACACGGCCCTAAAGTCTTCAAATGTTCGGACTGCAACATAGAATTAAACTCAGCCTTAAAGTTGAAGAGCCACAGAGCAAAAACTCACGGGGTCCGTGAGGTCCCCTGCCAAAAGTGCTCCGAAAAATTCCCCTCCGAATACGAGCGACAAAAACACCTGATTCAAGCTCACGATATTGGCCATAAATGCACGTATTGTGAAATGTTTAGCAAGAAAAAGGGATTGAAGTTACACAAGCAACTAGTTCATACATACgattataataaatatgaagAGCAAATAGACATTAAAGAAGAACCAGATGTCATTGAAACTAAAGTGAAAACATTTGATCCCGATGCAGTAGAAAAGAAAAGGATAGCCAAGCTAAGACGACAAAACATTGCCTGTGTCTTAAACATGTCCACAGCTACACCTTTCAAATACTATATGAAtaggtttcgttgtttctaTTGCTCGAAAAACCATCCAGAATTTGAACCAATCAAAACTCACACTCTCACTAAACACACCTACTGCGATCCTGAGGGGATAGCCATGAAATCCATTAAAGGGAAAGATGCTATAGTCAAAGTAGATATTAGTTCCTTAGCTTGCAAGTTATGCTGCATGTCAATTAGCGACCTAGACGCTCTATCAGACCATTTAGTATCAAATCATCATACGAAACACGATAAATTGATGATGGATATAGTCCAACCTTTTAAGATAGCGAAGGACAACATGGCTTGTCCGCTCTGCCCGAACGTAGCTTTTAGGTACTTTGTAAAGCTTTTAGAACACATGAACGAAAGCCATTCTAATAATAACGTGATATGCGTTTACTGCGGCCAAGCGTTTAGGAGTACGCCGTCCTATAGAGGTCATCTAGCGAGGTATCACAGGCCGAACTCGTGTAAATGTCCCGACTGCGATCTAGTGTTTCCTAACCCGCCTAAACTTACAACGCACAGAGCAAACGCTCACGGTGCTAAAGCTTTCAAATGCTCCAAATGCAGCGAGAGATTTTCCACTCAGTATCTGAGGCAGAAACATCTCATTGACGCCCACGGCTCGGGGCACAAATGCTCTTTCTGTGACAGAATGTTTGCTAGGAACTCCTACATGAAAGACCATATCAGAAAACTGCATTTGAAGGAGAAAAACGTGGAATGCTCAGTATATGAAATTGGGCTGAAAAACGTGAAAAGCACCAATTATCGGAAGAGGAGAAATCTACAAATAATATTCAACAACACCTCGATGATACCGTTCAAATGGCGGCAAAAATATCTCTGTTTTTACTGTGGCGAGGACGTGCCCGACTATGATGCGCTTAAGAAGCACACGAGGGCACACGGACCGTGTACTTTACGGGACCGGGCGCTCACACGCGTCTCAGGCACTGATGTCGAGATCAAAGTTGACGTGTCCGACATCACATGCCAATTGTGCAACGAATCTCCCCCAAACTTCGATGAGATAATCTCCCATCTAATACACAAACACAACTTGCCTTATGACAAACACGCCGATCTTCTCATTGTCAAATACCGACTGGCCGATCTCAAATGTTTACTTTGCGAGGAAAGCTTCAATCACTTCAGCAAGCTCATCGTCCACGTTAACAATAGCCATCCTCTAAAAGTCCTTTCGTGTAATGTCTGCCATCAGAAATTTAACAAACAACGGGACCTGACTGCTCATTTCAGATCTTACCATAAAAAGGGAGGTTACACTTGCAATAAATGCGCCATTTCTTTTCCTACCAACTGGGCGCTTAGTAATCACAAATTTAAGACACACTCGTCAGCTTGTAATATATGTTTTAAAAGCTTTTCTTCGTCCGATAAGCGCCTAAAACATATGAAAACAGAACATGCAGGCGATAGCTTATTACAATGCGGATTTTGTTTGAAAACTATGAATACAAAACAGGGTTTCTTGCGACACGCGGCCGGCTGCACGTCCGCGAAGGACGATTCCAAATCGCAACATGTCATGGACGAGATTGTGTCCATTGACGATACAGAAAGGAGGCCCAATGTTAAACAAATTAGGAATAACATCGCTTGTATCCTCAATATGTCCACAGCAATACCGTTCAAACATTTCATGAATAAATTCAGATGTTTCTATTGCTCCAGACATTTCATAGAATGCGACGAACTCAAAGAACATACTATGATCGAGCATCCCCATTGCGATTCTAAGTTTAAATCCATGAAATTACGAAATAGAGAGGACATTTCGATTAAAATAGACATATCGTCGTTATCTTGTAAAATGTGCTTTGAACCTATGAACGATTTGGACCATTTAATAGATCATCTAACTTCAGAACATAAGGCGCGTTTTGACAAGTCTATAGAAATGAATATTCAACCGTTCAGACttataaaagacaattttgcCTGTCCTTTTTGCGGAGAAGTATCAAGGTACTTTAGCACTCTGCTAAGGCACGTCAGTATCGCCCATAcggataataaaaatatatgcatgTACTGCGGAAAGTCCTTTAGGACTAAACCGAATTTACGAGCGCACGTAGCGCGACGCCACAAGGTAGGCAAGATTTACAATTGTGACGCTTGCAAACTAGAGTTTACAAGAACGGTAGATCTCCGTTCGCACATGGGCAGGGTCCATGGCGACAAGACAGTCGACTGTCCTGAATGCCCGGAGAAATTCGTGTCCCAATACTCGATGCAAAGGCACCTAATTACCATACATGGCTCCGGCCACAAGTGCTCGTATTGCGGAAAATTATTCACCAGAAACTCCTTCATGGACAACCATATAAGACGTACGCATCTTAAAGAGAAAAACGTGCAGTGCTTGCTCTGCAACGACAGATTCTTCGATGCTGCGCTCCTTAAAAGCCATATGGTGAAACATATAGGGGAGAGAAATTTTCACTGCGATGTATGCGGTAAGAAGTTCCTATGGAAGAAAAACCTCCGCGGTCACATGGCCTCCCATGTTAAAAACGCTACTCACGCACTTACCTGA
- Protein Sequence
- MHQNGIGFIHLIWLHSHFSDAVCCDGLCCVASQAIPVRARTDIKQRSICGPSATERRRHNLVILFNNTSVIPFRSGSQYGCFYCGDKYPDYKEFVKHTKSHGICNVKHKSLINQKFGTVEVKLDISNVTCELCDEPFNNLDDIISHLNAKHGLRYDREVPMSLSAYRLVDLKCTECGKMFEYFRNLVMHVRKNHMEKLLPCEQCDKSFNKKSELMAHCRIYHRRAGYQCVKCERCFRTSSLLRLHLINTHGSSERKCTRILSSLRARNSIISEDALTPFEDLEDCEIETQRKRLRERNAIAKKNRENIACILNMTTAIPFKYYQNRFTCFHCSKDFNEHEDMRTHTLMEHPFYDLERKCPKSLKGVNLCIKLDISSLSCRICFEPFTDFDLLVDHLIMNHKANYDKNVTGIMQLFRLEKYNMGCPLCPQSFSYFNILLKHMNQEHSAKTHLCSNCGAVFASEAILTMHIARIHGPKVFKCSDCNIELNSALKLKSHRAKTHGVREVPCQKCSEKFPSEYERQKHLIQAHDIGHKCTYCEMFSKKKGLKLHKQLVHTYDYNKYEEQIDIKEEPDVIETKVKTFDPDAVEKKRIAKLRRQNIACVLNMSTATPFKYYMNRFRCFYCSKNHPEFEPIKTHTLTKHTYCDPEGIAMKSIKGKDAIVKVDISSLACKLCCMSISDLDALSDHLVSNHHTKHDKLMMDIVQPFKIAKDNMACPLCPNVAFRYFVKLLEHMNESHSNNNVICVYCGQAFRSTPSYRGHLARYHRPNSCKCPDCDLVFPNPPKLTTHRANAHGAKAFKCSKCSERFSTQYLRQKHLIDAHGSGHKCSFCDRMFARNSYMKDHIRKLHLKEKNVECSVYEIGLKNVKSTNYRKRRNLQIIFNNTSMIPFKWRQKYLCFYCGEDVPDYDALKKHTRAHGPCTLRDRALTRVSGTDVEIKVDVSDITCQLCNESPPNFDEIISHLIHKHNLPYDKHADLLIVKYRLADLKCLLCEESFNHFSKLIVHVNNSHPLKVLSCNVCHQKFNKQRDLTAHFRSYHKKGGYTCNKCAISFPTNWALSNHKFKTHSSACNICFKSFSSSDKRLKHMKTEHAGDSLLQCGFCLKTMNTKQGFLRHAAGCTSAKDDSKSQHVMDEIVSIDDTERRPNVKQIRNNIACILNMSTAIPFKHFMNKFRCFYCSRHFIECDELKEHTMIEHPHCDSKFKSMKLRNREDISIKIDISSLSCKMCFEPMNDLDHLIDHLTSEHKARFDKSIEMNIQPFRLIKDNFACPFCGEVSRYFSTLLRHVSIAHTDNKNICMYCGKSFRTKPNLRAHVARRHKVGKIYNCDACKLEFTRTVDLRSHMGRVHGDKTVDCPECPEKFVSQYSMQRHLITIHGSGHKCSYCGKLFTRNSFMDNHIRRTHLKEKNVQCLLCNDRFFDAALLKSHMVKHIGERNFHCDVCGKKFLWKKNLRGHMASHVKNATHALT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -