Basic Information

Insect: Cydia fagiglandana
Gene Symbol: Bcl11a
Assembly: GCA_963556715.1
Location: OY750816.1:9671150-9683390[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.4e-05 0.0022 19.4 1.7 5 23 125 143 122 143 0.95

2 14 2.5e-05 0.0016 19.8 0.7 1 23 149 171 149 171 0.97

3 14 5.3e-05 0.0034 18.8 0.9 1 23 177 199 177 199 0.97

4 14 4.2e-06 0.00027 22.2 0.6 1 23 205 227 205 227 0.98

5 14 4.8e-08 3.1e-06 28.3 0.2 2 23 239 260 238 260 0.96

6 14 5.7e-05 0.0037 18.6 0.2 3 23 268 288 266 288 0.98

7 14 0.00066 0.043 15.3 1.3 1 23 294 316 294 316 0.99

8 14 2.2e-05 0.0014 19.9 1.3 1 23 322 344 322 344 0.98

9 14 3.2e-06 0.0002 22.6 0.3 1 23 350 372 350 372 0.98

10 14 8.9e-06 0.00057 21.2 0.9 1 23 378 400 378 400 0.98

11 14 0.00085 0.055 15.0 3.9 1 23 421 443 421 443 0.97

12 14 0.00055 0.035 15.6 4.0 1 23 449 471 449 471 0.99

13 14 1.2e-05 0.00077 20.8 1.8 1 23 477 499 477 499 0.98

14 14 9.5e-07 6.1e-05 24.2 2.4 1 23 505 527 505 527 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.4e-05	0.0022	19.4	1.7	5	23	125	143	122	143	0.95
2	14	2.5e-05	0.0016	19.8	0.7	1	23	149	171	149	171	0.97
3	14	5.3e-05	0.0034	18.8	0.9	1	23	177	199	177	199	0.97
4	14	4.2e-06	0.00027	22.2	0.6	1	23	205	227	205	227	0.98
5	14	4.8e-08	3.1e-06	28.3	0.2	2	23	239	260	238	260	0.96
6	14	5.7e-05	0.0037	18.6	0.2	3	23	268	288	266	288	0.98
7	14	0.00066	0.043	15.3	1.3	1	23	294	316	294	316	0.99
8	14	2.2e-05	0.0014	19.9	1.3	1	23	322	344	322	344	0.98
9	14	3.2e-06	0.0002	22.6	0.3	1	23	350	372	350	372	0.98
10	14	8.9e-06	0.00057	21.2	0.9	1	23	378	400	378	400	0.98
11	14	0.00085	0.055	15.0	3.9	1	23	421	443	421	443	0.97
12	14	0.00055	0.035	15.6	4.0	1	23	449	471	449	471	0.99
13	14	1.2e-05	0.00077	20.8	1.8	1	23	477	499	477	499	0.98
14	14	9.5e-07	6.1e-05	24.2	2.4	1	23	505	527	505	527	0.98

Sequence Information

Coding Sequence: ATGGAGTCAAGTGAACTGCATACCGTGTGGGTGAAAACTGAGGTGAACGATGTCACAGAAGACGAGGCTCCAGGGTCTGCCGTGGTTAAACTAGAACCCACGGAGGAGGGCCTGAGCGAATCAAACGCGCCTGGAGAGCTGCAGCCCCATGATCTGGTGTTTACAAAACACGTGTGCGTCAAGGTCGAAGCGGAGTTCGTAAAGGACGAGGGAGAGGGCGCAGGAGGAAACGAGACAGCACATGTTTGCAAAAACGAGGCAGGACCGTGCGAGAACGAGACGGCAGGTGAACCGCAAGAGGAAGATTCCTGCTCTGCCGAGGTCCCTGTCAGAAAGAAACGTGCCACTTCCAACTCGGACCGATATAAATGCGAATGTGGCAAAAAATTCAAGCAATTGAGCAACTTAAAGGAGCACAGACGAATACACACCGGGGAGAAGCCGTATGCCTGCAATATTTGCGACCAGCGCTTCGCCAAACAGAACTCGTTGAAGAACCACGAGCGACTTCACACTGGGGAAAAGCCATATGCATGTGGAAACTGTGATAAGCGTTTCAGGCTCTCGGGTACTTTGAAGAAACACGAACGTCTTCATACGGGTGAAAAGCCGTATTCGTGCAAAATATGTCAGAAAGCGTTTACACAGTTAATCGGTTTGAAAAGACATGAACGAGTTCATTTAGAAGAAAGCGTCGCTCCTCCCCTTCCCCTCCCCTGCGAAGTGTGTGATAAGCGATTTTCGTCCCCGAGCGAATTAACCAGACATCAGCGTGTTCACACCGGGGAAAAGCCGTACTGGTGCGATATTTGCCAAAAAGGGTTTGCACAATTAGCTGCGCTAAAACAACATAAAAGGACTCACACAGGGGAGAAACCGTTCACCTGCGAAACGTGTAAAAAGCGATTCGGAGATTTAAGAGTTTTAAAAGATCATGAAAGAACGCACACGGGTGAGAAACCTTATTCCTGTCAATTGTGTAAAAAAGAGTTTGCACGATTGAGCACTTTGAAAAAACATGAGCAAATTCATACTGGTGAAAAAAGATTTTCTTGCGATATATGTAGAAAAGAGTTCAGACAATCTGGCGCGCTCAGCCAGCATATACGAGTACACACAGGGGAAAAGCCGTACACGTGTAAAACGTGTCAAAAGGAGTTTCCGCGAATGGATGCTTTGAAGAGACATGAAAGAATACATACGGAGAAAGAACACCATCAACATCATGAGACTCAAAACTCTGCAGCTGCAGAAAAACCTCATCATTGTGGCATCTGTCAAAAGAAATTCTGGTCTTCGGGCGATCTGAAGAAGCACCAGCGGATTCATAGTGGCGAGAAACCCTACACGTGTGAGATTTGTCAAAAAACGTTTGCGCACCTGAACTCTTTAAAGTTTCATACGAGAACTCACACCGGTGAAAAACCTTACCCCTGCGCAATATGCGATAAACGGTTTGCGCAATTGTGCCAACTGAAGAAACACGAACGCAGTCACACGGGCGAGAAACCGTTTTCCTGCAAAATCTGTGATAAGCAATTCACGCAAGCGGACCATCTCAGGACGCATGAGAGAATACACTCTGGTGAGAGACCTTATACGGAGCTAAAAGGCTATCAATGGCTGCACTGCAGCGATTGCGAGGTGTTGATGCGGGCAGTTCACAATTTCCAGCAAACTGCGCTCAAGGGTGTGAAGGCTTTTAAATATTTGCTGAGTAAAAACGAACCAGCTATTACGCAAACTACACTTGTGACACCGATTCTAGAAGCAAAACCGGAGCCAATCACAATCAAAACTGAACCAGGAATTAACCCCCCCACAACCAACCAGGAGGTGAGCTGA
Protein Sequence: MESSELHTVWVKTEVNDVTEDEAPGSAVVKLEPTEEGLSESNAPGELQPHDLVFTKHVCVKVEAEFVKDEGEGAGGNETAHVCKNEAGPCENETAGEPQEEDSCSAEVPVRKKRATSNSDRYKCECGKKFKQLSNLKEHRRIHTGEKPYACNICDQRFAKQNSLKNHERLHTGEKPYACGNCDKRFRLSGTLKKHERLHTGEKPYSCKICQKAFTQLIGLKRHERVHLEESVAPPLPLPCEVCDKRFSSPSELTRHQRVHTGEKPYWCDICQKGFAQLAALKQHKRTHTGEKPFTCETCKKRFGDLRVLKDHERTHTGEKPYSCQLCKKEFARLSTLKKHEQIHTGEKRFSCDICRKEFRQSGALSQHIRVHTGEKPYTCKTCQKEFPRMDALKRHERIHTEKEHHQHHETQNSAAAEKPHHCGICQKKFWSSGDLKKHQRIHSGEKPYTCEICQKTFAHLNSLKFHTRTHTGEKPYPCAICDKRFAQLCQLKKHERSHTGEKPFSCKICDKQFTQADHLRTHERIHSGERPYTELKGYQWLHCSDCEVLMRAVHNFQQTALKGVKAFKYLLSKNEPAITQTTLVTPILEAKPEPITIKTEPGINPPTTNQEVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -