Cfag025842.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750809.1:2805678-2807024[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.5e-08 0.00013 22.6 0.0 4 38 14 48 14 52 0.90 2 2 0.13 1.9e+02 2.9 0.0 1 15 342 356 342 362 0.86
Sequence Information
- Coding Sequence
- ATGAACACTGCTAAAAAGAAAAAACCGTACACATCCATTCAGTTACAAAATGCTATATCAGCTGTTAAAGATGGCATGGGTATTTCAGaggcatctcaaaaattttGCATCCCAAAAGCTACCCTTCATGACAAAGTTCATAAAAAATATCCAGAAGATGCAACTCCCGGTGCGCAAACAGTGctaaataaagaagaagaaaaacaaCTTGTGACGTGGATACTCTATTTAAGTGATGCCGGGTTTCCAATAACAAAACCGAATCTTATTAATACTGTGAAAAATTTGGTACAAAATCTAAAGAGGAAAAATTCTTTTAAAAATGGCACACCTGGACGGCATTGGTATGAGGGATTTATGGCCAGACACCCCGAGCTTTCAATGAGAGTATCACAAAATCTTACAGCACCAAGAGCAAAGATTACTGAAGAATCTATTCGAGCCTGGTTTGATCGCATAGATAGGTAtttcacaaaagaaaacttaaagGAGGTTCTGGCTGATCCGCGACGATTATTTAATTGTGCAGAGTCAGCCTTTAACCTTAGTCCACAAAGTTCTGTCATTGTACAAAGCAGCAATAGAGTTTACAGCAAAATTGCAAACGACGAAAAAGAGAGCTTGACAGTATTGATGACGGTATCTGCGGATGGGAATATACAGCCACCATTAGTGTTATTTAAGCGTACGCCAACAACAAGCATTACCATGCCGCCAAAATGGGGTTTCGGTCGATCAGAATCAGGTCGGACGACCGGAGAGACTTTTTGTGAATACGTAACAAACGTTTTCTATCCTTGGTTGATTGGGCATAACATTCCTCTCCCAGTCATTTTGTTTATGGATCACTCATCTCATATTAATTTGCCGCTATCCGAATTCTGCCGAGAAAAAAGAATTATCTTGATCGCTCTCCCATCAAACTCAACACATCGTCGCCATCCGCTAGATGTTGCAGTTTTTCCTCCTTTAAAGCACCTCTGGAAAGTGTATAGGCAAACAAATAATCCAAATACGGAGTTAAAAGAGGAAGATTTCGCGAAAGCATTGGACCAGTGCATAAAAAAAGCTTCATTGAAGGATGCAATTGTAAGTGGATTCAGGACCTGTGGTTTGTCCCCGTTTAATCCAGATAGCAGTGACTACAATAAACTTATTAAACATGTTAAAGAGACTGATAAAACAACCGCAAAAGATAACGACAAAGACAACGAGCTGATAAAGCCAACGAGGGCACCAAGTACCTTCCTTGCAGGAGTGGAAAGGAGGATTCCAGGAAATGACCTTGAAGAATTCCGAATGAGTGGAGAAACTTGGCTAGTTTCTGAAAATCatggtttgttttaa
- Protein Sequence
- MNTAKKKKPYTSIQLQNAISAVKDGMGISEASQKFCIPKATLHDKVHKKYPEDATPGAQTVLNKEEEKQLVTWILYLSDAGFPITKPNLINTVKNLVQNLKRKNSFKNGTPGRHWYEGFMARHPELSMRVSQNLTAPRAKITEESIRAWFDRIDRYFTKENLKEVLADPRRLFNCAESAFNLSPQSSVIVQSSNRVYSKIANDEKESLTVLMTVSADGNIQPPLVLFKRTPTTSITMPPKWGFGRSESGRTTGETFCEYVTNVFYPWLIGHNIPLPVILFMDHSSHINLPLSEFCREKRIILIALPSNSTHRRHPLDVAVFPPLKHLWKVYRQTNNPNTELKEEDFAKALDQCIKKASLKDAIVSGFRTCGLSPFNPDSSDYNKLIKHVKETDKTTAKDNDKDNELIKPTRAPSTFLAGVERRIPGNDLEEFRMSGETWLVSENHGLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -