Cfag017213.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750801.1:15636695-15642394[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.004 5.5 7.8 0.0 29 45 29 46 29 46 0.92 2 2 4.7e-19 6.4e-16 58.8 0.0 1 43 53 96 53 98 0.95
Sequence Information
- Coding Sequence
- ATGCTGCTCACAGAGCTGCTCCTCCGGAGAATAGGTTTTTTCAGAAGATTCCTCAGATACCACCGCCGACAACACCACCGGCGCAGCAGAGGCACGCTGTACGGGCGATGCAAGCGTGAAGGGATCGAGCTGTCACGGTCTAACCCTACGCCCTGGTCTGAAGACGCAATGGGAGAGGCCTTGGAAGCTGTTAGGGTAGGACAAATGTCAATAAACCAAGCAGCCATCCACTATAATCTGCCTTATTCGTCACTCTACGGACGGTTCAAGAGGTGCAAATATCAAaGTCCTCAAGCAATGCCCCAGCAGAACATGCCGGAGATGGAGATGGAACCCCAACAAGCCCAGATGTACTATCAGCACCAAGTGCCCATGCCCGAGGAATATCATCAGAGCTACATGACGGAACCTGAAGCCATACATGCCCCTGTCATTCAGGAGCCCTATGGGATGTACTATCAAGGTACGTACTACCTAGTTATGCCTGTGGCCGCCGCAGACACATCTGATCTGCGCTGA
- Protein Sequence
- MLLTELLLRRIGFFRRFLRYHRRQHHRRSRGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSPQAMPQQNMPEMEMEPQQAQMYYQHQVPMPEEYHQSYMTEPEAIHAPVIQEPYGMYYQGTYYLVMPVAAADTSDLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -