Cfag017215.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750801.1:15645647-15657067[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3e-11 4.2e-08 33.8 0.0 4 39 229 265 226 269 0.89 2 3 9.2e-13 1.3e-09 38.7 0.1 1 39 280 318 280 321 0.94 3 3 3.8e-08 5.2e-05 23.9 0.1 2 30 336 364 335 365 0.94
Sequence Information
- Coding Sequence
- ATGCCTGGCCGCGGTTTTCCGCAGGTCAAGCACGAACCGGCCTCCGAGGACGACGACTCGCAGTACGCTCACGGCTACCTCACCAATCAGaTACTACCTTCACTGGAACTCCATCCGGTGAAGCTCGAGGCGGATATAGACGACAATGCGTCTGCGCATATATTACGGCACTTACATCAGGGTTCGGAAAGTCTGGAGGAGCTAgcgccgccggcgccggcggGGCCCGCCGCCACGCCGGTCGCGGTCAAGCAAGAGCCCGCCGAGCCCGCTGTCGTGCTGGAGACGCTCGCACCAGCGCCGCACTCGGACACGCTGGTATGTAGTAAGGGGGTGCAGGGTTGTCAGGGTTCGGAGAGTCTGGAGGAGCTAgcgccgccggcgccggcggGGCCCGCCGCCACGCCGATCGCGGTCAAGCAGGAGCCCGCCGAGCCCGCTGTCGTGCTGGAGACGCTCGCACCAGCGCCGCACTCGGACACGCTGGGTGCCATGCTCATTGATAGACACAAGACGCTGCCCGGCGCGAACGATGCTGACTCCATGGATTTCATGCCTCTCCTTACTGTTAAAGACGAACCTCTCTCTGAAGGAGAGCAACACCACCTGAGTGGGTCAGACACGAGTGATTCCAGCACCCAGCCGGAGCCGCCTCGCGGCAGCCCTAAAAACTGGACGCAGCAAGACATGGAACTGGCTCTTGAGGCCCTGCGGACGCACAACATGAGCCTTACTAAGGCGTCAGCCACATACGGCATCCCGTCAACAACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAAGGCGCGTCCAAGTCCTGGAGTGAAGAGGATCTTCGCGGCGCCCTTCACGCGCTGCGGTCCGGAGCTATTTCTGCCAATAAGGCCAGCAAGGCTTACGGCATTCCAAGCAGCACTCTCTACAAGATCGCGCGGCGTGAGGGCATCCGCCTGGCGGCTCCGTTCAACGCGGCGCCCACGGCGTGGCGGAGGGCTGACTTAGAGCGGGCGCTGGCCTCCATCCGCTGCGGAGCGGCGTCTGTGCAGCGAGCGGCTTCGCAGTTTGGCATACCTACAGGTCTAGAATGGAGGTCTAGTCAACCCTTCGACAACCTGCAACCCCATGCTTATAATGTGCATAATGTGCTTGATTGCTTTCGCTTGAAGATGAAAGGTGAAAACAGTAGTTTGTTCTTAAACTGTATCTTCTTTAGGTCGTTTTTGGTAGTGTGA
- Protein Sequence
- MPGRGFPQVKHEPASEDDDSQYAHGYLTNQILPSLELHPVKLEADIDDNASAHILRHLHQGSESLEELAPPAPAGPAATPVAVKQEPAEPAVVLETLAPAPHSDTLVCSKGVQGCQGSESLEELAPPAPAGPAATPIAVKQEPAEPAVVLETLAPAPHSDTLGAMLIDRHKTLPGANDADSMDFMPLLTVKDEPLSEGEQHHLSGSDTSDSSTQPEPPRGSPKNWTQQDMELALEALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEEDLRGALHALRSGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGAASVQRAASQFGIPTGLEWRSSQPFDNLQPHAYNVHNVLDCFRLKMKGENSSLFLNCIFFRSFLVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -