Camp000742.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419680.1:4771676-4811330[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.29 16 6.7 0.6 1 18 434 451 434 451 0.92 2 12 0.0011 0.061 14.3 4.0 1 23 480 502 480 502 0.99 3 12 0.049 2.6 9.1 1.5 1 21 521 541 521 542 0.95 4 12 0.66 36 5.6 3.2 2 21 607 626 606 627 0.91 5 12 1.8 97 4.2 2.6 2 19 692 709 691 712 0.90 6 12 1.8 97 4.2 2.6 2 19 728 745 727 748 0.90 7 12 0.66 36 5.6 3.2 2 21 764 783 763 784 0.91 8 12 0.66 36 5.6 3.2 2 21 849 868 848 869 0.91 9 12 0.32 17 6.6 3.3 2 23 934 956 933 956 0.90 10 12 0.004 0.22 12.5 0.8 2 23 963 984 962 984 0.97 11 12 0.0028 0.15 13.0 0.3 2 21 992 1011 992 1012 0.94 12 12 0.0029 0.16 13.0 10.1 1 23 1022 1044 1022 1044 0.94
Sequence Information
- Coding Sequence
- ATGGCGTTGTGCGAGAGCCAGTTGGACGTGATTCCAGTCAAGCGCGAGTCGTCTCCTGGCTCGGAAAGCAGCAAAGAGAGCCCCGATAAGAAGCCCAAGATGGAACCCAACGGGGACCTATTTGTGCCCGGCGGCCTGCCCCTAGCTGTGGACTACAGGTCCCCTGTCTCACACTTCGTGCCTCCGGAGCTGGCTGGCTATGCGGCCAAATCGAAGGCAGAGCCGTCTATCGTCACAACACCGGTGGCAGAAACGACGCCGGTGAAGCGTAAGCGCGGCAGGCCGAGAGTAGACAAGACCAGTCCAGAATACTTGGCCAATTTAGCCGCCAGGAAACAGGCTAAGGAGATGGCGGCCGTGATGAACAATCGCAACGACAGCGGTGAGAAACGTAAACGCGGCCGACCGAGAGTGGACAAAACCAGCCCGGAATACTTGGCCAGAAAGCGCGCCAGGGAGCTGGAGGCTTTAGAGAGGAAGGCTAAAAGGGAGTACAAACGTCGAGGCGCTGGTGAGTCGGCGGCCTCCTCGTCGGCCGGCGAGACCCCGAGGGTCAAGCGCAAGTATACCAAGCGGGCCCCGGGAGCTAATAAGGATTCGCCGCCAGCAGCCGAGCGGGTGAAAGGGAAACGGGGGCGCCCCCGAAAGGACGCCAACAACCACAAACCACAGCAACCCAAGATCCGTGTTCGGAGTAACCTAATGCCTGATAACAATGAACCCATCACTTTGGACAGCGACGACGAACCGGACCTAGGGTCCCCGAGCCAAGCCTCAGACTCCCTAAGCCTGGACGAGAATCTCCGCGCACTCAGACACATACACGAGAAATACGCAAACATAGACAAGGATGACTTGTACGAAGCGCACTTACTGGCAGCCAAGTTTAAGAAACCGGACGAGCGAGCGCAGGACGACGATGTTCTCTCAGTTAGGAGCTCTGAAGGTCGGGCGTCGGTGAAAGACTCTGACCGGGTGGAGAAACTAGAAGACAGCTCCGGATCTGACTCGGACAGCAGCAGTTCAGGTTCTGGCAGTTCGTCCAGCGGGTCCAGCACGACGTCCAGCTCATCGTCCAGCTCATCGTCCAGCTCGGACAGCGAGTCCGAGCCGGAGACGAGAACCGACCCCAACACGCACCAGCCTGCCGAGGACGACAGATCGTTCGGCGCGTGGTCGTACTCGGGCGCCGTCTCGTCCGGATCCGAGTCGGATCCGGAGCGGAACGCGGCCGCCGTACCGATCCCGCCGCGGCAGGACGAGATCAGCGAGTCCGAGAACGAGTCGCCGGACAAGAGCTTCCAGTGCCACATCTGCAAGAAGTGGTACTCTACGAGGGTTACGTTGAATCGTCCCGCTCCGGATCCGAGTCGAATCCGGTACGGAACGTGGCAGGACGAGATCAGCGAGTCCGAGAACGAGTCTCCGGACAAGAGCTTCCAGTGCCACATCTGCAAGAAGTGGTACTCTACGAGGGTTACGTTGAAGATTCACCGGCGCTCTCACCAAGCCCGCGGCGGCGGCGGCGGCTCGCGGCAGCGCACGCGCAGCTCCGACCGCTACGAGTGCGACTGCTGCGACATGACCTTCAACCGCCGCGAGAAGCTGTGGGACCACAAGCGGCTCCGACCGCTGCGAGTGCGACTGCTGCGACACGACCTTCAACCGCCGCGAGAAGCTGTGGGACCACAAGCGGCTCCGACCGCTGCGAGTGCGACTGCTGCGACACGACCTTCAACCGCCGCGAGAAGCTGTGGGACCACAAGTGAGCGCTCTGTAACTTATACCCGCGAGCAACCAGGCGGCTCCGACCGCTGCGAGTGCGACTGCTGCGACATGACCTTCAACCGCCGCGAGAAGCTGTGGGACCACAAGCGGCTCCGACCGCTGCGAGTGCGACTGCTGCGACATGACCTTCAACCGCCGCGAGAAGCTGTGGGACCACAAGCGGCTCCGACCGCTGCGAGTGCGACTGCTGCGACACGACCTTCAACCGCCGCGAGAAGCTGTGGGACCACAAGTGAGCGCTCTGTAACTTATACCCGCGAGCAACCAGGCGGCTCCGACCGCTGCGAGTGCGACTGCTGCGACATGACCTTCAACCGCCGCGAGAAGCTGTGGGACCACAATGAGCGCTCTGTAACTTATACCCGCGAGCAACCAGGCGGCTCCGACCGCTGCGAGTGCGACTGCTGCGACATGACCTTCAACCGCCGCGAGAAGCTGTGGGACCACAATGAGCGCTCTGTAACTTATACCCGCGAGCAACCAGGCGGCTCCGACCGCTGCGAGTGCGACTGCTGCGACATGACCTTCAACCGCCGCGAGAAGCTGTGGGACCACAAGCGGCTCCGACCGCTGCGAGTGCGACTGCTGCGACACGACCTTCAACCGCCGCGAGAAGCTGTGGGACCACAAGCGGCTCCGACCGCTGCGAGTGCGACTGCTGCGACACGACCTTCAACCGCCGCGAGAAGCTGTGGGACCACAAGTGAGCGCTCTGTAACTTATACCCGCGAGCAACCAGGCGGCTCCGACCGCTGCGAGTGCGACTGCTGCGACATGACCTTCAACCGCCGCGAGAAGCTGTGGGACCACAAGCGGCTCCGACCGCTGCGAGTGCGACTGCTGCGACATGACCTTCAACCGCCGCGAGAAGCTGTGGGACCACAAGCGGCTCCGACCGCTGCGAGTGCGACTGCTGCGACACGACCTTCAACCGCCGCGAGAAGCTGTGGGACCACAAGTGAGCGCTCTGTAACTTATACCCGCGAGCAACCAGGCGGCTCCGACCGCTGCGAGTGCGACTGCTGCGACACGACCTTCAACCGCCGCGAGAAGCTGTGGGACCACAAAGCGAGCGCGCACCGCGGCGCGATGACGGTCCGCTGCGAGGTGTGCCGCAAGTGCTTCGAGGACGACGCCGAACTGGCGCACCACGCAGCCACACACTCCGCCGACGACAGAGCTGGTCGCTGCACGGACTGCGGCTCGTCGTTCCAGCGGTACGAGCAACTCGCGCGGCACCGGCTCTCGTGCGCGCGCGCCGACAGCGGCGGCTCCCACGCGTGCCACCAGTGCGGCAAGCGCTTCACGCACGCGCACTCGCTCACCAGGCACGCGCACAACCATGCGCGCCAACTGTATAGATGCGTCGTTTGCAAGGTGAGACACAACTGA
- Protein Sequence
- MALCESQLDVIPVKRESSPGSESSKESPDKKPKMEPNGDLFVPGGLPLAVDYRSPVSHFVPPELAGYAAKSKAEPSIVTTPVAETTPVKRKRGRPRVDKTSPEYLANLAARKQAKEMAAVMNNRNDSGEKRKRGRPRVDKTSPEYLARKRARELEALERKAKREYKRRGAGESAASSSAGETPRVKRKYTKRAPGANKDSPPAAERVKGKRGRPRKDANNHKPQQPKIRVRSNLMPDNNEPITLDSDDEPDLGSPSQASDSLSLDENLRALRHIHEKYANIDKDDLYEAHLLAAKFKKPDERAQDDDVLSVRSSEGRASVKDSDRVEKLEDSSGSDSDSSSSGSGSSSSGSSTTSSSSSSSSSSSDSESEPETRTDPNTHQPAEDDRSFGAWSYSGAVSSGSESDPERNAAAVPIPPRQDEISESENESPDKSFQCHICKKWYSTRVTLNRPAPDPSRIRYGTWQDEISESENESPDKSFQCHICKKWYSTRVTLKIHRRSHQARGGGGGSRQRTRSSDRYECDCCDMTFNRREKLWDHKRLRPLRVRLLRHDLQPPREAVGPQAAPTAASATAATRPSTAARSCGTTSERSVTYTREQPGGSDRCECDCCDMTFNRREKLWDHKRLRPLRVRLLRHDLQPPREAVGPQAAPTAASATAATRPSTAARSCGTTSERSVTYTREQPGGSDRCECDCCDMTFNRREKLWDHNERSVTYTREQPGGSDRCECDCCDMTFNRREKLWDHNERSVTYTREQPGGSDRCECDCCDMTFNRREKLWDHKRLRPLRVRLLRHDLQPPREAVGPQAAPTAASATAATRPSTAARSCGTTSERSVTYTREQPGGSDRCECDCCDMTFNRREKLWDHKRLRPLRVRLLRHDLQPPREAVGPQAAPTAASATAATRPSTAARSCGTTSERSVTYTREQPGGSDRCECDCCDTTFNRREKLWDHKASAHRGAMTVRCEVCRKCFEDDAELAHHAATHSADDRAGRCTDCGSSFQRYEQLARHRLSCARADSGGSHACHQCGKRFTHAHSLTRHAHNHARQLYRCVVCKVRHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -