Camp024277.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419662.1:19432718-19443349[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.6 1.9e+02 3.2 0.1 3 10 263 270 262 277 0.74 2 10 2.2 1.2e+02 3.9 0.1 3 15 310 319 308 327 0.60 3 10 2.2 1.2e+02 3.9 0.1 3 15 372 381 370 389 0.60 4 10 0.057 3.1 8.9 1.7 1 23 394 418 394 418 0.96 5 10 4.1 2.2e+02 3.1 5.2 1 21 538 558 538 560 0.94 6 10 5.1e-05 0.0028 18.5 3.4 1 23 566 588 566 588 0.99 7 10 6.3e-05 0.0034 18.2 1.2 2 23 596 617 595 617 0.98 8 10 0.00027 0.014 16.3 3.3 2 23 626 647 623 647 0.94 9 10 0.0003 0.016 16.1 4.3 2 23 656 677 653 677 0.94 10 10 0.8 44 5.3 6.3 1 20 683 702 683 706 0.89
Sequence Information
- Coding Sequence
- ATGTCTGAATGTAGGATTTGCTTGGAAACAAGGAAGAATGTGCGGTGTATATTTAAGGGCACGGATCGGGACCTCAATACTACGTTCGCTGACATGATAACTTACGTCGCTAGTATTAAGATTGCAAGAGAAGACGGGATCACGGATCAGATATGCCTGACTTGTCGGAAAAAGCTCACAGAGTTATATGATTTTAAACTTCTCATACTAAGGTCCAACACTCAACTGCATCAAAAGAACAATTCAAATTTCAAAAGGATCCATTTTAACGACATAACAGATGTCAAGCTTGAAATCGCTGTGGCCCCGACTGATGAGAAATATCTACTCAAAGATTACGAGGACATTAAGATGAATCTGCAGAGTGCAGAGGACTCTGTATGTTACAAGGATACCACAATTAAGAAGGTGGAGCCAAGCTCCGTGGAAGTGGAGATAGACAATCAGCCGATGTCGGTGATGGACTTTCTTGACACCATCAAAGATGATCTGCAAAATGACTATGACCAGGATTTCGATACGGCCCAAAGCGATCCAGATTCGGACTCTGATGAATATTTGCCACACAGCATTTTACAGAAGAAATATGGGAAAAAACATAAGAAAAAGAAAAAGACTAAATTGTCAAAACCCACCAAAAACGGAAACACCAAAACGGAAGCACCGAGCCGTGTCCGTATAAAGCCGACCTGGATCGAGGACCTGCGCGTCATGGCCACGTACGAGCCCAAGAGCAAGAGACCCAGAGAGAAGAAGAAGTACAAGTCCAAGACGAAGGAGGGGATGTGCCCCTACTGCGGCAAGCTCTCTAAGAACCTCGCCAGCCATCTCCCGACCTGGATCGAGGAACTTCGCGTCATGGCCACGTACGAGCCCAAGAGACCCAGAGAGAAGAAGAAGTACAAGTCCAAGACGAAGGAGGGGATGTGCCCCTACTGCGGCAAGCTCTCCAAGAACCTCGCCAGCCATCTCGTGTTACATAGGGAGCCGCTGTATAAGTGCGGCTTTGAGCCGACCTGGATCGAGTACCTGTGCGTCATGGCCACGTACGAACCCAAGAGCAAGAGACCCAGAGAGAAGAAGAAGTACAAGTCCAAGACGAAGGAGGGGATGTGCCCCTACTGCGGCAAGCTCTCCAAGAACCTCGCCAGCCACCTCGTGCTACATAGGGAGCCGCTGTATAAGTGCGGCTTTGAGGGTTGCGGCAGAACGTTCCACCACCGCGCCCCCATGCTGAGCCACGAGCGCGCGCACACCGCCGCGCGGGACTTCCGCTGCGACCAGTGCGTCGCGGCCTTCCACTCGCTGCACGCGCTCAACCAAACGTTCCACCACCGAGCCACCACGCTGAGCCACGAGCGCGCGCACACCGCCGCGCGGGACTTCCGCTGCGACCAGTGCGTCGCGGCCTTCCACTCGCTGCACGCGCTCAACCAAACGTTCCACCACCGAGCCACCACGCTGAGCCACGAGCGCGCGCACACCGCCGCGCGGGACTTCCGCTGCGACCAGTGCGTCGCGGCCTTCCACTCGCTGCACGCGCTCAACCAAACGTTCCACCACCGAGCCACCACGCTGAGCCACGAGCGCGCGCACACCGCCGCGCGGGACTTCCGCTGCGACCAGTGCGTCGCGGCCTTCCACTCGCTGCACGCGCTCAACCAACACAAGAAATGTCACGACCAGACAAGAAGATACGTTTGTGAAACCTGCAGCAAGTCTTACAAGCGGGGGCACCAGCTATCCCGGCACGTGCGCACACACAACTCCGCCAACAAGAACGTCCAGTGCGAGCTGTGCAACATGTCCTTCTTCTCACAGATCGGGCTGAGACACCACATGAGGGTGCACACCGGCGAGCGGCCCTACAACTGCGAGTGCGAGCTGTGCAACATGTCCTTCTTCTCGCAGATCGGGCTGAGACACCACATGAGGGTGCACACCGGCGAGCGGCCCTACAACTGCGAGTGCGAGCTGTGCAACATGTCCTTCTTCTCACAGTTCGGGCTGAGGCACCACATGAGGGTGCACACCGGCGAGCGGCCCTACAACTGCGAGCTGTGCTCGCAGCCGTACAGCTACAAGCACGACTTCAACCGCCACTGCCTCAAGAAGCACGGGGTGTTCCTCAAGCGGCGCTCGGTCAACGTGATGAACGCGGAGGTGTTGTCTCGCGAGCGCCTGGTGATGCGCGAGCTGGCGGCGGCGGCGCGCTCCGGGGCTATGGGCCCGCCGCCGGCGCTCTTCGTCGGCAAACAGGGCGCCCTGGCCTACGAGCTGGCTATCCGCACTTTACGCAAGAACCCGCTGCTACTCGCGCCGCACTCTTGA
- Protein Sequence
- MSECRICLETRKNVRCIFKGTDRDLNTTFADMITYVASIKIAREDGITDQICLTCRKKLTELYDFKLLILRSNTQLHQKNNSNFKRIHFNDITDVKLEIAVAPTDEKYLLKDYEDIKMNLQSAEDSVCYKDTTIKKVEPSSVEVEIDNQPMSVMDFLDTIKDDLQNDYDQDFDTAQSDPDSDSDEYLPHSILQKKYGKKHKKKKKTKLSKPTKNGNTKTEAPSRVRIKPTWIEDLRVMATYEPKSKRPREKKKYKSKTKEGMCPYCGKLSKNLASHLPTWIEELRVMATYEPKRPREKKKYKSKTKEGMCPYCGKLSKNLASHLVLHREPLYKCGFEPTWIEYLCVMATYEPKSKRPREKKKYKSKTKEGMCPYCGKLSKNLASHLVLHREPLYKCGFEGCGRTFHHRAPMLSHERAHTAARDFRCDQCVAAFHSLHALNQTFHHRATTLSHERAHTAARDFRCDQCVAAFHSLHALNQTFHHRATTLSHERAHTAARDFRCDQCVAAFHSLHALNQTFHHRATTLSHERAHTAARDFRCDQCVAAFHSLHALNQHKKCHDQTRRYVCETCSKSYKRGHQLSRHVRTHNSANKNVQCELCNMSFFSQIGLRHHMRVHTGERPYNCECELCNMSFFSQIGLRHHMRVHTGERPYNCECELCNMSFFSQFGLRHHMRVHTGERPYNCELCSQPYSYKHDFNRHCLKKHGVFLKRRSVNVMNAEVLSRERLVMRELAAAARSGAMGPPPALFVGKQGALAYELAIRTLRKNPLLLAPHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -