Camp008297.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419655.1:25358932-25374286[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0034 0.18 12.8 0.9 3 23 194 215 194 215 0.97 2 12 0.0041 0.22 12.5 8.1 1 23 225 247 225 247 0.98 3 12 6.9 3.7e+02 2.4 2.7 5 23 537 556 529 556 0.91 4 12 0.0014 0.077 14.0 1.8 1 20 575 594 575 598 0.94 5 12 0.032 1.7 9.7 0.5 1 23 614 636 614 637 0.95 6 12 4.1 2.2e+02 3.1 2.7 2 23 646 667 644 668 0.88 7 12 0.16 8.8 7.5 0.7 1 23 679 701 679 702 0.93 8 12 0.022 1.2 10.2 0.8 3 23 726 746 725 747 0.94 9 12 0.022 1.2 10.2 0.8 3 23 761 781 760 782 0.94 10 12 0.16 8.6 7.5 2.0 3 23 796 816 795 817 0.94 11 12 0.022 1.2 10.2 0.8 3 23 888 908 887 909 0.94 12 12 0.022 1.2 10.2 0.8 3 23 984 1004 983 1005 0.94
Sequence Information
- Coding Sequence
- ATGGATAAATTGTCTTCGAATGAAGACAAAATTAATAATACTAAGGCCTCACATAATATTGAGCAGAAAAAGAAAGTTTTGCAGAAGTTTGTGCACATCTCGGACCGCCTAGCGCCGCCGCGGGCGGTGGCGGTGCTGCCGGGCGCGCTGACGCTGCGGCGCGGCGCCGTGTGGCCGCGCGCCGTGCTGCCGGCCCGAGTGCGCTTCGGACCCGTACAAGGGATCAAACGCAGTCTAACAGCGGAAGAAGCAGAGAGCCTAAAATTAGCGCACAGCGACTCTGGCTTGCCACTGTTCATGCTGAAAACGGAGGACGACACCCACACGCATATAGATGTTTCTGACATGGataaatcaaatTGGCTAAGCTTACTACCGCTCGGAGACCAAAGCACAGCCAATGTGTGGCTTTACGAGGAGGACCACGAATTATACGCGGCTACAATAAATACTATACCAGCCCGGGTGCCGCTTGTACTGGGCTATAGCAAGGAGTACGTGGATGCCCACAAGTTACCTGTCGAACAACCGGTATTGGACCTTGAGGCAGAATTGACCGCAAAACATCGTCAATGGTGGTGCCACGAGTGTCAGCGGTCCATGTCCACAGCGGCGTTGTTACAGCGGCACATGGACGTTTATCATACGGAGGAGAAGCAGAGACCGCGCCGCTACCGATGTCTGCACTGCACCAGATCTTTCTGCAGATTGTTTACATTAAGACGGCACACGGCAAGACATTGCAAAGAAAATGCTAAGAAAGCGAAAGAAGACAAAAATAATGAATTACAAGGTGGCCAAACTGCGAATGGTCTTCTAGACACTTCAAAACCAGACGACCTCCCCGACCTACCCATCACCCCCGCCGACGACAGCCGCCTCCCCTCCGACGAGAGTCTCCAAACCCTGACCAACAACCTAGACTTCTCCACGACCCTGTTCGACACGGAGCGCATCAACCTCGACATCTCCGGCAGCTCGCGGGAGGACTTCAACTACTCGCTGGGGCTTAAGGACGATATTGCGCTGGCGGCTGGGATAGATTTTGGAATTGACGAGTCGTGCAACTTATCCATCACCCTGGCTGAAGACAGCCGCCTCCCCTCCGACGAGAGTCTCCAAACCCTCACCAACAACCTAGACTTCTCCACGACCCTGTTCGACACGGAGCGCATCAACCTCGACATCTCGGGCAGCTCGCGGGAGGACTTCAACTACTCGCTGGGGCTTAAGAACGATATTGCGCTGGCGGCTGGGATAGATTTTGGAATTGACGATTCGTGCAACAGCCGCCTTGCCTCCGACGAGAGTCTCCAAACCCTGACCAACAACCTAGACTTCTCCACGACCCTGTTCGACACGGAGCGCATCAACCTCGACATCTCCGGCAGCTCGCGGGAGGACTTCAACTACTCGCTGGGGCTTAAGGACGATATTGCGCTGGCGGCTGGGATAGATTTTGGAATTGACGAGTCGTGCAGTAAAAAGGAGGTGAGAAGAGAGAACACGGAAACGGTGTTCCTAACCTGTAGATATTGTAACCAAGCCGTCATACGAGGGCGGCAACGTCAGCATGTCAAGGCATGCACGGAAAGAAAATATCACTGTGAGTGCGGACGCGCGTTCCTATACAAGGACAAACTGGCCCTACACATACACATAGACCACCCTAACCTGACTTCTGACCAGCGGAGACAGAATAGTAAAGAAGATGATTTGCAATATAAATGTGAAACGTGCAATCACAAGTTTAAGCGGCGCGGTATGCTAGTGAACCATCTCTGGCGAGTCCACAAGACGCTTTCAACTGCAGTCCCCCTAGAGAAGAAAGTGCGACATTACCCGTGCGTCACGTGTCCCAAAGTGTACCGGACGGCCGCGAAACGGGACAGTCACGTCAAGATACACCACCCTGAGAAGAAAGTGCGACATTGCCCGTGCGTCACGTGCCCCAAAGTGTACCGGCCGGCCGCGAAACGGGACAGCCACGTCAAGATACATCACCCTGTTACTTTAGAGAAGAAAGTGCGACATTACCCGTGCGTCACGTGTCCCAAAGTGTACCGGACGGTCGGCAAACGGGACAGTCACGTCAAGATACATCACCCTGGTTTGTCGGTATCCGGCATAGGAACGTCAATAGAGGGCGGGCTCGTGTCGTGCGCGCCGGCCGCGTGCTCCGCGTGCCCGCGCCAGTACGCCACGCGCGCCAAGCTGCTGCAGCACGTGCGGCGACACCATCCCGCGCTGGGCGGGCTCGTGTCGTGCGCGCCGGCCGCGTGCTCCGCGTGCCCGCGCCAGTACGCCACGCGCGCCAAGCTGCTGCAGCACGTGCGGCGACACCATCCCGCGCTGGGCGGGCTCGTGTCGTGCGCGCCGGCCGCGTGCTCCGCGTGCCCGCACCAGTACGCCACGCGCGCCAAGCTGCTGCAGCACGTGCGGCGACACCATCCCGCGCTGGTACACCACCCTATACTATATACAAGTCCCATTCAACATCACCACCACTACCTGAAACATAGGAACGTCGATAGAGGGCGGGCTCGTGTCGTGCGCGCCGGCCGCGTGCAGCGCGTGCCCGCGCCAGTACGCCACGCGCGCCAAGCTGCTGCAGCACGAACGTCGATAGAGGGCGGGCTCGTGTCGTGCGCGCCGGCCGCGTGCAGCGCGTGCCCGCGCCAGTACGCCACGCGCGCCAAGCTGCTGCAGCACGTGCGGCGACACCATCCCGCGCTGGTACACCACCCTATACTATATACAAGTCCCATTCAACATCACCACCACTACCTGAAACATAGGAACGTCGATAGAGGGCGGGCTCGTGTCGTGCGCGCCGGCCGCGTGCAGCGCGTGCCCGCGCCAGTACGCCACGCGCGCCAAGCTGCTGCAGCACGTGCGGCGACACCATCCCGCGCTGAGGGCGGGCTCGTGTCGTGCGCGCCGGCCGCGTGCTCCGCGTGCCCGCGCCAGTACGCCACGCGCGCCAAGCTGCTGCAGCACGTGCGGCGACACCATCCCGCGCTGGTACACCACCCTATACTATACAAGTCCCATTCAATAATCACCACCACTACCTGA
- Protein Sequence
- MDKLSSNEDKINNTKASHNIEQKKKVLQKFVHISDRLAPPRAVAVLPGALTLRRGAVWPRAVLPARVRFGPVQGIKRSLTAEEAESLKLAHSDSGLPLFMLKTEDDTHTHIDVSDMDKSNWLSLLPLGDQSTANVWLYEEDHELYAATINTIPARVPLVLGYSKEYVDAHKLPVEQPVLDLEAELTAKHRQWWCHECQRSMSTAALLQRHMDVYHTEEKQRPRRYRCLHCTRSFCRLFTLRRHTARHCKENAKKAKEDKNNELQGGQTANGLLDTSKPDDLPDLPITPADDSRLPSDESLQTLTNNLDFSTTLFDTERINLDISGSSREDFNYSLGLKDDIALAAGIDFGIDESCNLSITLAEDSRLPSDESLQTLTNNLDFSTTLFDTERINLDISGSSREDFNYSLGLKNDIALAAGIDFGIDDSCNSRLASDESLQTLTNNLDFSTTLFDTERINLDISGSSREDFNYSLGLKDDIALAAGIDFGIDESCSKKEVRRENTETVFLTCRYCNQAVIRGRQRQHVKACTERKYHCECGRAFLYKDKLALHIHIDHPNLTSDQRRQNSKEDDLQYKCETCNHKFKRRGMLVNHLWRVHKTLSTAVPLEKKVRHYPCVTCPKVYRTAAKRDSHVKIHHPEKKVRHCPCVTCPKVYRPAAKRDSHVKIHHPVTLEKKVRHYPCVTCPKVYRTVGKRDSHVKIHHPGLSVSGIGTSIEGGLVSCAPAACSACPRQYATRAKLLQHVRRHHPALGGLVSCAPAACSACPRQYATRAKLLQHVRRHHPALGGLVSCAPAACSACPHQYATRAKLLQHVRRHHPALVHHPILYTSPIQHHHHYLKHRNVDRGRARVVRAGRVQRVPAPVRHARQAAAARTSIEGGLVSCAPAACSACPRQYATRAKLLQHVRRHHPALVHHPILYTSPIQHHHHYLKHRNVDRGRARVVRAGRVQRVPAPVRHARQAAAARAATPSRAEGGLVSCAPAACSACPRQYATRAKLLQHVRRHHPALVHHPILYKSHSIITTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -