Camp000437.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419680.1:489471-512919[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.6 88 4.3 5.6 1 23 276 299 276 299 0.98 2 11 0.0032 0.17 12.9 0.5 2 23 399 420 399 420 0.95 3 11 3.1 1.7e+02 3.4 0.9 1 20 424 443 424 446 0.85 4 11 8.6e-05 0.0046 17.8 2.6 1 23 451 474 451 474 0.97 5 11 0.001 0.054 14.4 0.1 2 23 483 505 483 505 0.94 6 11 0.58 31 5.7 0.1 3 23 544 565 543 565 0.91 7 11 8.7e-05 0.0047 17.8 0.7 1 23 570 593 570 593 0.95 8 11 0.00012 0.0066 17.3 0.1 3 23 1269 1289 1268 1289 0.98 9 11 0.00053 0.029 15.3 0.1 1 23 1295 1317 1295 1317 0.96 10 11 0.11 5.8 8.0 1.8 2 23 1324 1345 1323 1345 0.95 11 11 1e-05 0.00055 20.7 0.4 1 23 1351 1374 1351 1374 0.96
Sequence Information
- Coding Sequence
- ATGGCTGCAGTCAAGTCAGAAGCGGCGGAAGAGCTGCGCGCGTGTAGAATATGCCTCGCTACGGACACCAAACTTTTCGGTATCTTTGAACAGCGTTTAGATGAGGCTTTTATCGATATTATGGGCACTACGCTTTCAGTGTGGGATGGATGCCCGCAGCACTTGTGTGCATTGTGCGGCGCGCAGCTCATCAAGGCGCATGCACTGCGAGCGCGTGCGCACCGCGCCGACGCGCTGCTCAAGCAAGCTCTCATGCAGCAACATATTATAACAACAAGCTACCTGGCAACTCTAGACCGCGTGTCGCAACGGCTCGCGCTCTGCCTGACCATCTACCGTCCTACTATCATGGAGACAACACACGACGAGACCAAACAGGAAATGGATGATGACGACTTTGATCTGTACCACCCGGAATTTGACGAGCCGATCATCAACCTGAAGAACAGTATGTTGCTGGAGAGTGCGAAAGAGACGGAGCTACACGCGGAGGACATCAAGACGGACGTGAGCGAGATGGAGATAAAGGAGGAGGAGCCTGTCAGAAAGAGAAAAGATAAAGTTAGAAGAGAGAAGGTGAGAGTGAAAAGAGACAAGAGTATAAAGACGAAGAAAGTCCAGAAGATAAAAGAAGTAGAAGTAGAAGAGAAGGAACCAAAGAAGTACAAGCGGAAACTGAAGGGGTTCAAAAAGTTCTTTGCCAGTGAGGACGATTATATCAAGTTTGAGAACACTTATAATATAGAGATAGTAAAGTTATCAGAAGAGGAACAGCAAAAAGAGCTAGACGCACGCAAAGAGTCGAGCAACTATCTCCGCTCGGCGTACCGCTGCGAGAGGTGCTTCAAGGGGTTCCTGTCTCACACCACCTTCGAGAACCATCAGAAGAAGACACACGACCCGGTAACACTGACTCACTCATTGATCGATCATCAAAATTATTTACCACTTCCAGCACAGGCTTACCGCTTTGAGAGGTGCTTCAAGGGGTTTCTGTCTCACACCACCTTCGAGAACCATCAGAAGAAGACACACGACCCGGTAACACTGGCTCACTCATTGATCGATCATCAAAATTATTTACCACTTCCAGCACAGGCTTACCGCTCTGAGAGGTGCTTCAAGGGGTTCCTGTCTCACACCACCTTCGAGAACCATCAGAAGAAGACACACGACCCGAGCAACGGCCGCAACGAGTGTGTACTATGCGGCGCGCGTTTCCGTCACCCAGCGGGTCTTAGGAAGCACTTCGAGTCTCACACACTCAAGTTTATATGCAAGATCTGCCAGTTCATGACTAGACATCGGAGTATGGCGGTGATGCACGCTGACTTTCATTCAGGGAAGACATTCGTCTGCAAATACTGCGGTCTCACCTTCAACAAACAAACTACATTCAACACGCACACACGTGTGCAGCACCCTTTAGAGAACGCCTCGGCGGGCACGTGCGACGTGTGTGGGGAGACCTTTACCGGCAAGCGGGGCCTGCAGCAACATAAGGCCATCGCGCATAAAAAGCTGACGACGCCGGAACTGAAATGCCGCTCGTGCCTGGTTCAGTTCGAGAGCTTGGACGCGAAAACACGTCACAAGGTCAACAACATCTGCGACCCCAAATTAAGGCCGTGTGCGGCGTGCGGCGAGCGGTTTCAGGACGAGGAAACGGTGAAGAAACACTACCAGGACAACCATGTGCAGGAACATTACAAATGCGACCAGTGCGACACAACATTCGCGAAAAAGTCCTCCCTGGCCGTCCACTTCGAGCGCGTCCATCTCAAGATCAAACCCAAGAAACCGGCCTTCTACAAGTACCACCAGTACGGCAAGGGCAGAATGAAGATACGGAACGCTGAGATCTGCGAGATCTGCGGCAAAGGGTACCCGGTGAGTTGTGGCGACGCGCGTGTGACACCCCTGGAGCAGTTCTACAAGTACCACCAGTACGGCAAGGGCAGAATGAAGATACGGAACACAGAGATCTGTGGCAAAGGGTACCCGGTAAGTTGTGGCGACGCGCGTGTGACACCCCTGGAGCAGTTCTACAAGTACCACCAGTACGGCAAGGGCAGAATGAAGATACGGAACACAGAGATCTGTGGCAAAGGGTACCCGGTAAGTTGTGGCGACGCGCGTGTGACACCCCTGGAGCAGTTCTACAAGTACCACCAGTACGGCAAGGGCAGAATGAAGATACGGAACACAGAGATCTGTGGCAAAGGGTACCCGGTAAGTTGTGGCGACGCGCGTGTGACACCCCTGGAGCAGTTCTACAAGTACCACCAGTACGGCAAGGGCAGAATGAAGATACGGAACGCAGAGATCTGCGAGATCTGCGGCAAAGGGTACCCGGTGAGTTGTGGCGACGCGCGTGTGACACCCCTGGAGCAGTTATACAAGTACCACCAGTACGGCAAGGGAAGAATGAAGATACGGAACGCAGAGATCTGCGAGATCTGCGGCAAAGGATACCCGGTGAGTTGTGGCGACGCGCGTGTGACACCCCTGGAGCAGTTATACAAGTACCACCAGTACGGCAAGGGCAGAATGAAGATACGGAACGCAGAGATCTGCGAGATCTGCGGCAAAGGGTACCCGGTGAGTTGTGGCGACGCGCGTGTGACACCCCTGGAGCAGTTATACAAGTACCACCAGTACGGCAAGGGCAGAATGAAGATACGGAACGCAGAGATCTGCGAGATCTGCGGCAAAGGGTACCCGGTGAGTTGTGGCGACGCGCGTGTGACACCCCTGGAGCAGTTATACAAGTACCACCAGTACGGCAAGGGAAGAATGAAGATACGGAACGCAGAGATCTGCGAGATCTGCGGCAAAGGGTACCCGGTGAGTTGTGGCGACGCGCGTGTGACACCCCTGGAGCAGTTCTACAAGTACCACCAGTACGGCAAGGGCAGAATGAAGATACGGAACGCAGAGATCTGCGAGATCTGCGGCAAAGGGTACCCGGTGAGTTGTGGCGACGCGCGTGTGACACCCCTGGAGCAGTTATACAAGTACCACCAGTACGGCAAGGGAAGAATGAAGATACGGAACGCAGAGATCTGCGAGATCTGCGGCAAAGGATACCCGGTGAGTTGTGGCGACGCGCGTGTGACACCCCTGGAGCAGTTATACAAGTACCACCAGTACGGCAAGGGCAGAATGAAGATACGGAACGCAGAGATCTGCGAGATCTGCGGCAAAGGGTACCCGGTGAGTTGTGGCGACGCGCGTGTGACACCCCTGGAGCAGTTATACAAGTACCACCAGTACGGCAAGGGCAGAATGAAGATACGGAACGCAGAGATCTGCGAGATCTGCGGCAAAGGGTACCCGGTGAGTTGTGGCGACGCGCGTGTGACACCCCTGGAGCAGTTATACAAGTACCACCAGTACGGCAAGGGAAGAATGAAGATACGGAACGCAGAGATCTGCGAGATCTGCGGCAAAGGGTACCCGGTGAGTTGTGGCGACGCGCGTGTGACACCCCTGGAGCAGTTCTACAAGTACCACCAGTACGGCAAGGGCAGAATGAAGATACGGAACGCAGAGATCTGCGAGATCTGCGGCAAAGGGTACCCGGTGAGTTGTGGCGACGCGCATGTGACACCCCTGGAGCAGTTCTACAAGTACCACCAGTACGGCAAGGGCAGAATGAAGATACGGAACGCAGAGATCTGCGAGATCTGCGGCAAAGGGTACCCGGTGAGTTGTGGCGACGCGCGTGTGACACCCCTGGAGCAGCTCTACAAGTACCACCAGTACGGCAAGGGCAGAATGAAGACACGGAACGCAGAGATCTGTGAGATCTGCGGCAAAGGGTACCCGGACACGACGTGGCTCCGGTATCACCAGCGCACGCACACGGGCGAGCGGCCCTACAAGTGCGCGCAGTGCACCAAGAGCTACATGACGCCCGCCGGCTTGCAGCGTCACGTGGTGATCCACACGGGCGTGCGGCGCTGGCAGTGCTCGCAGTGCCCCAAGACCTTCCTGCACCAATCCTCCATCTACACACACAAACTGGTACACACGGGTGAGAAACCATACGTCTGCCAAATCTGCAGCAAGGCGTTCACTCAATCTGGCTCCCTACAAACCCACGTGAAATACGTCCACATGAAACTAAAACCTCCTCCGCGACGCCGACGACAAGATCTCTATAAGCCGCCCGGCTGA
- Protein Sequence
- MAAVKSEAAEELRACRICLATDTKLFGIFEQRLDEAFIDIMGTTLSVWDGCPQHLCALCGAQLIKAHALRARAHRADALLKQALMQQHIITTSYLATLDRVSQRLALCLTIYRPTIMETTHDETKQEMDDDDFDLYHPEFDEPIINLKNSMLLESAKETELHAEDIKTDVSEMEIKEEEPVRKRKDKVRREKVRVKRDKSIKTKKVQKIKEVEVEEKEPKKYKRKLKGFKKFFASEDDYIKFENTYNIEIVKLSEEEQQKELDARKESSNYLRSAYRCERCFKGFLSHTTFENHQKKTHDPVTLTHSLIDHQNYLPLPAQAYRFERCFKGFLSHTTFENHQKKTHDPVTLAHSLIDHQNYLPLPAQAYRSERCFKGFLSHTTFENHQKKTHDPSNGRNECVLCGARFRHPAGLRKHFESHTLKFICKICQFMTRHRSMAVMHADFHSGKTFVCKYCGLTFNKQTTFNTHTRVQHPLENASAGTCDVCGETFTGKRGLQQHKAIAHKKLTTPELKCRSCLVQFESLDAKTRHKVNNICDPKLRPCAACGERFQDEETVKKHYQDNHVQEHYKCDQCDTTFAKKSSLAVHFERVHLKIKPKKPAFYKYHQYGKGRMKIRNAEICEICGKGYPVSCGDARVTPLEQFYKYHQYGKGRMKIRNTEICGKGYPVSCGDARVTPLEQFYKYHQYGKGRMKIRNTEICGKGYPVSCGDARVTPLEQFYKYHQYGKGRMKIRNTEICGKGYPVSCGDARVTPLEQFYKYHQYGKGRMKIRNAEICEICGKGYPVSCGDARVTPLEQLYKYHQYGKGRMKIRNAEICEICGKGYPVSCGDARVTPLEQLYKYHQYGKGRMKIRNAEICEICGKGYPVSCGDARVTPLEQLYKYHQYGKGRMKIRNAEICEICGKGYPVSCGDARVTPLEQLYKYHQYGKGRMKIRNAEICEICGKGYPVSCGDARVTPLEQFYKYHQYGKGRMKIRNAEICEICGKGYPVSCGDARVTPLEQLYKYHQYGKGRMKIRNAEICEICGKGYPVSCGDARVTPLEQLYKYHQYGKGRMKIRNAEICEICGKGYPVSCGDARVTPLEQLYKYHQYGKGRMKIRNAEICEICGKGYPVSCGDARVTPLEQLYKYHQYGKGRMKIRNAEICEICGKGYPVSCGDARVTPLEQFYKYHQYGKGRMKIRNAEICEICGKGYPVSCGDAHVTPLEQFYKYHQYGKGRMKIRNAEICEICGKGYPVSCGDARVTPLEQLYKYHQYGKGRMKTRNAEICEICGKGYPDTTWLRYHQRTHTGERPYKCAQCTKSYMTPAGLQRHVVIHTGVRRWQCSQCPKTFLHQSSIYTHKLVHTGEKPYVCQICSKAFTQSGSLQTHVKYVHMKLKPPPRRRRQDLYKPPG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -