Camp000731.2
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419680.1:4497843-4525997[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.023 1.2 10.1 0.1 1 23 401 424 401 424 0.96 2 15 4.3 2.4e+02 3.0 0.0 1 23 458 480 458 480 0.97 3 15 4.3 2.4e+02 3.0 0.0 1 23 516 538 516 538 0.97 4 15 4.3 2.4e+02 3.0 0.0 1 23 574 596 574 596 0.97 5 15 4.3 2.4e+02 3.0 0.0 1 23 632 654 632 654 0.97 6 15 4.3 2.4e+02 3.0 0.0 1 23 690 712 690 712 0.97 7 15 2.9 1.6e+02 3.5 0.1 2 11 718 727 717 731 0.88 8 15 0.011 0.61 11.1 1.0 2 21 831 850 831 851 0.92 9 15 0.00036 0.02 15.8 1.2 2 23 867 888 866 888 0.95 10 15 0.00032 0.017 16.0 0.3 1 23 893 915 893 915 0.98 11 15 0.00028 0.015 16.2 5.2 1 21 924 944 924 949 0.94 12 15 0.0012 0.067 14.1 1.7 1 23 957 980 957 980 0.92 13 15 0.0052 0.28 12.2 0.3 1 23 986 1009 986 1009 0.96 14 15 0.042 2.3 9.3 0.4 3 19 1023 1039 1021 1040 0.89 15 15 0.091 5 8.3 0.9 1 23 1053 1076 1053 1076 0.96
Sequence Information
- Coding Sequence
- ATGTCAAATAAAGATAAAGGGGCCCGCTCCAGGTCCGGCAGCCCCCCTGATAGATGGTCGGATGTTTCGAGTATGGATTTTAATCAGCCCCACTGCAGCTCAGAGGAGAGTCAAATCCCGCCAGGACAACTATCGATGGCGCAGTCTTCAGTGTTTACTCCGCCGGCTCATTTAATAGACTCGCAAGAAAATAAAACTCCCTCTCAGTCCCCTTCCTCCCCTCTTACCCCAATTGGACGCACTAAATACACAACCAATGATCAAGGTCCTTTTTTGATATACGTTCAAAAAATAGAAGCGGCTTTAGATTCGGGAACTACTCTACACCCAGTGACCTTTGGGCGTTTCCTGCAAACGCGAAAAAGGGAATTTCCCAATATTGTTGAGGGGTCGGTTAAAAGAATTGGGCGAAATCGGGTATCAATCTGCTTCCACTCCGCTGAAGATGCCAATCACTTCCTAGAATCTTCCACTTTAACACACAGTCACTACAAGGCTTTTGTGCCATCTTTTAATGTCTCAAGACTGGGACTGGTGCGAGGAATTCCTGCTGACTGGTCCCCTGAGGAGGTGCTCGAAAATCTTAAGGTGCCTGATGGTCTCCAAGTCCAAGTTTGCTGGGAGTGCCTCGCCGCTGTCCAAGCGTCGCTTCGGTTTAGGAACCTCATTGTTGATTCCTACAATGTCCTCATTGATTACTCCCGAAAGCACACATTCCTCAACGCTCCAACAGACCTGTCCGTCCACGCCCGGCAGAGGCTCAGTGTCACCCAGCTGGAGCTCTCCGAGCTACAGGACCTGGTGCAAATAGAGGTGGATGTCAGCGTAGTTAAAGAGGAAACTAAGGAAGAGCTAGTCGAAGAGTCAGAACCGGTGAAATCCGAGACAGATTACTTCGACACGGACTTCCCAGACGCTCCCCACCCAGAATCCTCAGAGGATGACGTGCAACTGTCCAAGCTGAAGAGGAAAAAGGACAGAAAGACCAAGAAGGTGAAGAAGAAGAGAGAGGAACGACAGAGGGCGCAGAAGGTGAAGATTAAGACTGCTGGAATAAAAAGTGAAAAGGACCAGCAACGCAGCCTCCGAAAGCTGAAGAATCTGCCGACAGATCTAGTGGAGTTGTACACCATGACTGAGGAAGAAATGTGGGAGGTGAGGGCGGAAGACGTGAGCAGCGCAGAGTTCTGCGCGCTCAAGTACAAGTGTGCGGACTGCGTGATCGGGTTCAACTCGGAGAGGCTCATGCAGGACCACATGCAGGGGAAACACGTACCGAAAAGCCCGTCCTGCCACCAGTGCGACGTGTGCCTCGCGTATTTCCTGACGCGCGACAACGTGGCGTCGCACCGCGCGCTGCACCTCACGGCGTACCGCTGCGGCGCGTGCGGCGCGCGCACCGCGCTCAAGCGGCGCGTGGCGGCGCACGCGCGCACGCACCGCGACCCGAACGTCACGTGCCACACGTGCGGGGAACAGTTCAGTGTATACTGCACTAAGACGCGCGACAACGTGGCGTCGCACCGCGCGCTGCACCTCACGGCGTACCGCTGCGGCGCGTGCGGCGCGCGCACCGCGCTCAAGCGGCGCGTGGCGGCGCACGCGCGCACGCACCGCGACCCGAACGTCACGTGCCACACGTGCGGGGAACAGTTCAGTGTATACTGCACTAAGACGCGCGACAACGTGGCGTCGCACCGCGCGCTGCACCTCACGGCGTACCGCTGCGGCGCGTGCGGCGCGCGCACCGCGCTCAAGCGGCGCGTGGCGGCGCACGCGCGCACGCACCGCGACCCGAACGTCACGTGCCACACGTGCGGGGAACAGTTCAGTGTATACTGCACTAAGACGCGCGACAACGTGGCGTCGCACCGCGCGCTGCACCTCACGGCGTACCGCTGCGGCGCGTGCGGCGCGCGCACCGCGCTCAAGCGGCGCGTGGCGGCGCACGCGCGCACGCACCGCGACCCGAACGTCACGTGCCACACGTGCGGGGAACAGTTCAGTGTATACTGCACTAAGACGCGCGACAACGTGGCGTCGCACCGCGCGCTGCACCTCACGGCGTACCGCTGCGGCGCGTGCGGCGCGCGCACCGCGCTCAAGCGGCGCGTGGCGGCGCACGCGCGCACGCACCGCGACCCGAACGTCACGTGCCACACGTGCGGGGAACAGTTCAGGTGGGCTAGACTAGTGTATACTGCACTAAGACGCGCGACAACGTGGCGTCGCACCGCGCGCTGCACCTCACGGCGTACCGCTGCGGCGCGTGCGGCGCGCGCACCGCGCTCAAGCGGCGCGTGGCGGCGCACGCGCGCACGCACCGCGACCCGCAGGTGGGCTAGCGACTATACCTTCGAGAGGGGGAGCTTCGGCTCCAGGGCCTTGGGGTCCAAGGAGGGGACAGCTTCGGCTGTCGGCAGCAAGCGGTGTTCGCGTACAAAATCGAAGTTATCCTACCACCGAGGGGTATGCAACCAGGCGAGACCGCAGTGCGACTGCTGCGGCAAAGTGTTCGCCAACAAGATGACCCTCAAGTACCATCTCAAGATCCTGCCTCAGAATAAAGAAGATAAACCCAAAGAGAAGCTATACATAACGTGCAAGGGCTGCGATAAGGTCTTCCACTCGAAGAAGAGTTACCGAGCGcatgtCGTGATACACGACGGCCTAACATACCCGTGTCCCATTTGCGGAAAGCTGTTCCAGTGGAAACGGAACCTGGCGCGACATACTAGAAATCACAGAGACCGCGACGCGGGCGCCACGCACGAGTGTCGCGACTGCGGCAAAACGTTCAGCTCCCGCGACTGCTATAATAACCACATGAAACTGAGCAAACGGCACGTCCAAGAGGacgcttatgtACACGAGTGCTCCTATTGCGGCAAAAAATTCGCAACAAAGTGGTGCATGGTCGACCACATAGACTGGGACCATCTCAAGCGGATCAAGTACCAGTGTAGCGTCTGCTTCAAAGCATTCAAAACGGCGAAGATAATGGTGGCACACATGAACAATATACACGAGGGAAAGAAAAACCGCGAGCCGGATGGCGAACATCTGTGCGAGATCTGTGGCAAGTCTTACAAGACGGTGAAGCGACTGAAAGGCCACGTGTGGGCGATGCATACAAACCGCTCAACGACAAAAAGCTTCAAATGCAAGCTCTGCCCCGCGACCTTCACCTGGCAGACCTCCATCTACAAGCACGTCAAGATGATGCACGACAAACGACCCAAGCAAATCCGTCCCCTGCCGGCCAAGAAACTAGAGTTTCCCGGCGCCGAGCTCATCGCCCGCGAGTACTTCCAGCAACCCAGCGGCCTCGCGCACATACCCCTACACAACATAGTCCAGAACATAGTATAG
- Protein Sequence
- MSNKDKGARSRSGSPPDRWSDVSSMDFNQPHCSSEESQIPPGQLSMAQSSVFTPPAHLIDSQENKTPSQSPSSPLTPIGRTKYTTNDQGPFLIYVQKIEAALDSGTTLHPVTFGRFLQTRKREFPNIVEGSVKRIGRNRVSICFHSAEDANHFLESSTLTHSHYKAFVPSFNVSRLGLVRGIPADWSPEEVLENLKVPDGLQVQVCWECLAAVQASLRFRNLIVDSYNVLIDYSRKHTFLNAPTDLSVHARQRLSVTQLELSELQDLVQIEVDVSVVKEETKEELVEESEPVKSETDYFDTDFPDAPHPESSEDDVQLSKLKRKKDRKTKKVKKKREERQRAQKVKIKTAGIKSEKDQQRSLRKLKNLPTDLVELYTMTEEEMWEVRAEDVSSAEFCALKYKCADCVIGFNSERLMQDHMQGKHVPKSPSCHQCDVCLAYFLTRDNVASHRALHLTAYRCGACGARTALKRRVAAHARTHRDPNVTCHTCGEQFSVYCTKTRDNVASHRALHLTAYRCGACGARTALKRRVAAHARTHRDPNVTCHTCGEQFSVYCTKTRDNVASHRALHLTAYRCGACGARTALKRRVAAHARTHRDPNVTCHTCGEQFSVYCTKTRDNVASHRALHLTAYRCGACGARTALKRRVAAHARTHRDPNVTCHTCGEQFSVYCTKTRDNVASHRALHLTAYRCGACGARTALKRRVAAHARTHRDPNVTCHTCGEQFRWARLVYTALRRATTWRRTARCTSRRTAAARAARAPRSSGAWRRTRARTATRRWASDYTFERGSFGSRALGSKEGTASAVGSKRCSRTKSKLSYHRGVCNQARPQCDCCGKVFANKMTLKYHLKILPQNKEDKPKEKLYITCKGCDKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHTRNHRDRDAGATHECRDCGKTFSSRDCYNNHMKLSKRHVQEDAYVHECSYCGKKFATKWCMVDHIDWDHLKRIKYQCSVCFKAFKTAKIMVAHMNNIHEGKKNREPDGEHLCEICGKSYKTVKRLKGHVWAMHTNRSTTKSFKCKLCPATFTWQTSIYKHVKMMHDKRPKQIRPLPAKKLEFPGAELIAREYFQQPSGLAHIPLHNIVQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -