Camp002981.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419656.1:1597245-1610305[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.084 4.5 8.4 1.7 3 23 29 49 28 49 0.94 2 13 3.4e-05 0.0018 19.1 1.2 1 23 87 110 87 110 0.96 3 13 0.19 10 7.3 2.7 1 23 112 134 112 134 0.96 4 13 4.6 2.5e+02 2.9 0.0 1 14 168 181 168 190 0.72 5 13 0.62 33 5.7 2.1 3 19 254 270 252 274 0.89 6 13 0.00099 0.054 14.5 0.7 1 23 280 303 280 303 0.92 7 13 0.024 1.3 10.1 1.9 2 23 314 336 313 336 0.95 8 13 0.00089 0.048 14.6 0.0 3 23 343 365 341 365 0.93 9 13 0.032 1.7 9.7 0.2 3 23 373 393 373 393 0.97 10 13 0.071 3.9 8.6 0.2 1 20 398 417 398 420 0.94 11 13 0.055 3 9.0 2.3 1 23 426 448 426 448 0.97 12 13 0.0002 0.011 16.6 2.4 1 23 454 476 454 476 0.99 13 13 0.00016 0.0087 16.9 2.0 1 23 482 505 482 505 0.97
Sequence Information
- Coding Sequence
- ATGGCGCCCGAGACCGAGCCCGGCCCGCTGGCCCTCAAACTGACCACCAAACTGACCACGATCGATTTAGTCGGCGGCATCCTCTGTAGCATTTGCCGCTTAACATTTAAAAATAAAAAAGATTACGACTTGCACTATTTCCAGCATAATCTTGGTGGAGACGAAATCGTCTATACATGTGTGGTTTGTCTTAAAGATATTGCGGGCTACCCGAGTTTCCGCGGACACTGCTATACCTCACATGTCATCAAGGAAAGATTCAAATGCGAGCATTGCAACAAGCTGTTTTCTAAATCAGGAGCCCTAAAGGACCACATCGCATCTCTACACAAATTTGAATGCTCATGCTGCAAGAGAGAATTCCCAACTAAAAAAGAAATGCAGCTGCATAAAATAATCCACATGAATGACAAACCTCCGTTCAACTGCCATACTTGCAACGAGAAAGTTGACTGCATTGATGCGTGCGAGCAGCACATCGACAAGCACTCCGTCTCTCTCTACTCTTGCCCCATCTGCAGCGAGAAGATTGACAGCAAAGCGGCAGGCGTCGATCACCTCGCTATACATTTTGGCAACGTACTTAATTCAAATGACAGCGATTCAGATTCCGAACATGACAATGACAAACCAGAAGACAGTTCAATTGATTTGCTCGGTGGCATTCTCTGTTCCGTCTGCAGTGAAATCCATAAGAACCGATCAGAGATAGACCTGCACTTCAGTCAGGAGCACCCGGAGATGAGCGTGGTGTATGGGTGTAACATCTGCGGCAAGGACTTCGAGAAGTATACACAGTTCGGACAACATTGCTATGAGCACATCAGCAAAAATAGATACAAATGCGAGTCCTGCGAGAAGTCATTCAGCCGGCTGGCGCGCCTGGTGACGCACACGGAGGCGTTTCACGCGCGCGGCGACGGCAGCAGCAAGCCGCTCAGCTGCCAGCACTGCCCGCAGCAGTTCGCCAGCGAGTTCCGCTTCCGGGAGCACCAGAGACTAGAGCACGACATCTGCGTCATCATGTGCAGCCAGCCTGGCTGCGGGGAGATCTTCGAAACGCCGAAAGAGCTGGTCCTGCACCAGAAGCGGCACAGCCTCCCCAGCGACCTCTGGTGTCGGCTGTGCGGGCTGCAGTTTTCGTCGCGCGCCACGGCGGAGCGCCATCTGGACGTGCACCGGAAGAAGACCTTCTCGTGCCCCGTGTGCGCGCGCAAGTACGGCGAGAAGTACCTGCTCATGAAGCACGTGCCGCAGCACTTCGAGACCGTCATCCACATGTGCAAGGTGTGCGGCAAACTCTACAACGCCAAGAACCGTCTCATCCAGCACTCCAAAACGCACGCTAACGTCAAGAATTACAAGTGCTCGTTCTGCGCCAAGGGCTTCACCTCCATATACAAGCTCAAGCAGCACCAAAACATGCACACCAACATCCGCCCATACCGGTGCACTGTCTGCACCAAAGACTTCAACAACTACTCCAACTGGTACAAGCACCTGAGCAAAATACACAAGATCGACCCCAAAACTGTGAAGAAACCCGTATTCAACGTTGAGAAAGAAAATGTCGCTAAACAGAACAGTGTTCAGAACGATTTGATGGATATGGAATCTTTGAGTGTGAACATAGACATGCGGGAGTTGGAAGGGGACGGGCTGATGGGTGGGAGCGGGATGAAGGAGAGCTACCTGTTCCTGGAGCCGGGGACTGAGGCGGTGGACCTGGACAGCATCAACCCGTCCATCGCGCCGGGGACTGTGGCCGAGTTCGCCACCTTCGTCGCAGGCGCAATGCCCCCCGCCCCTGCCCCCGCCCCCGCTATGCCCCGCGAGTACGGCCCCGACTTCACTGTGACCGAGGGCGCCGACCTGCTCCACCTCGACGACCACATGCTGCCCCACATCGACCCCCTGCTGCCCCACATCGACCCCCTGCTGCCCCACATCGACCCCTACGGGCCCCGAGACAAGTGGGAGCCCTTCATTGTGACCAAGTACCAGGGGCGGGCCAACACAGACATATATTAA
- Protein Sequence
- MAPETEPGPLALKLTTKLTTIDLVGGILCSICRLTFKNKKDYDLHYFQHNLGGDEIVYTCVVCLKDIAGYPSFRGHCYTSHVIKERFKCEHCNKLFSKSGALKDHIASLHKFECSCCKREFPTKKEMQLHKIIHMNDKPPFNCHTCNEKVDCIDACEQHIDKHSVSLYSCPICSEKIDSKAAGVDHLAIHFGNVLNSNDSDSDSEHDNDKPEDSSIDLLGGILCSVCSEIHKNRSEIDLHFSQEHPEMSVVYGCNICGKDFEKYTQFGQHCYEHISKNRYKCESCEKSFSRLARLVTHTEAFHARGDGSSKPLSCQHCPQQFASEFRFREHQRLEHDICVIMCSQPGCGEIFETPKELVLHQKRHSLPSDLWCRLCGLQFSSRATAERHLDVHRKKTFSCPVCARKYGEKYLLMKHVPQHFETVIHMCKVCGKLYNAKNRLIQHSKTHANVKNYKCSFCAKGFTSIYKLKQHQNMHTNIRPYRCTVCTKDFNNYSNWYKHLSKIHKIDPKTVKKPVFNVEKENVAKQNSVQNDLMDMESLSVNIDMRELEGDGLMGGSGMKESYLFLEPGTEAVDLDSINPSIAPGTVAEFATFVAGAMPPAPAPAPAMPREYGPDFTVTEGADLLHLDDHMLPHIDPLLPHIDPLLPHIDPYGPRDKWEPFIVTKYQGRANTDIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00412932;
- 90% Identity
- -
- 80% Identity
- -