Camp000537.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419680.1:1576082-1596830[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.31 17 6.6 0.8 2 23 304 325 303 325 0.96 2 12 0.31 17 6.6 0.8 2 23 355 376 354 376 0.96 3 12 0.00019 0.01 16.7 3.0 2 23 438 460 437 460 0.96 4 12 0.0055 0.3 12.1 0.2 2 23 469 491 469 491 0.91 5 12 0.015 0.84 10.7 0.4 2 20 500 518 499 521 0.92 6 12 0.018 0.98 10.5 1.7 3 23 531 552 530 552 0.95 7 12 3.5e-05 0.0019 19.0 1.0 1 23 557 580 557 580 0.97 8 12 0.14 7.5 7.7 0.3 1 13 604 616 604 619 0.89 9 12 1.2 64 4.8 0.3 1 11 627 637 627 641 0.89 10 12 1.8e-05 0.00096 20.0 0.8 1 23 732 755 732 755 0.95 11 12 0.00049 0.027 15.4 1.1 1 23 761 783 761 783 0.98 12 12 4.8e-06 0.00026 21.7 0.5 1 23 789 812 789 812 0.96
Sequence Information
- Coding Sequence
- ATGACTACAATTAAGTTGGAATTAGAGGCAGAGGAGCCGCAGGCGTGCCGCATTTGTCTAGTAACTGATGTTAAGTTGTACGGGATATATGAACAACGTCTGGACGCAGCTTTTTTGGATATTACGGGAACAACGCTATCGGTGGGCGACGGGCTGCCGCGTCAGCTGTGCGCGGAGTGCGCGTCGCGGCTGCGCAGGAGCCTCGACCTGCGTCTGCGCAGCTGCCGCGCGCACGACATCCTCACACAGTGTCTCGCGGAACAGAATTACATCACAACAGACTACATTCGCGGGCTGGACCGGGTGTCTCTCTGCCTTCTGCCCGCGGAGGACAAGGACCTCGAAGCCGCGGAGCCCTACGCGCCGCTCGAGGAGCCCTATCCGCAGCCCAGCCTACAGGACTATCTCGACGGTGACATCTCTAATGACAGCTCGCAACTCCTGTCAACATTCTGCACTCGCGCCCTACGGCAAGACGATCTGACAGACGTCAAAGATGACAGCTACATAGAGTTGCCAGTCGTCGGGGAAATGGTGGAACTGGACGAGAAACTAGGGGAGATGAAACCGGTGGGAACCAGCATTAAGAGAGAGCGCGGCGTTAAGAGGAAACGAAAGGAAAAATCGATTAAGAGGGAGAAGAAGAAAGGGAAAACGAGAAAGAAACGGAGGTCAATAGAGGAGGAACCGGAAGTGAAACAGGAGAAGCCGGGGGTCGAGTGGGTGGCCAGGAAGAAGGCCCCCTACAAGCGGAAAAAGAAGGGGTTCAAGCGGTACTTCATGTGCGAGGAGGACTACGCCAAGTTTGAGGAGCGGTACAACATACAGGTGGTCCGCTTGTCTGAAGAGGAGCAGCTCCGCGAGATGGCGGCCCGCAAGGAGTCGGAGAACTACCAGCACGCGCTCGTGCGCTGCGACAAGTGCTTCAAGGGCTTTCTGTCCATGTTCACTTATGAGAACCATATCAAAGTACACGACCCGAAAACAAGTGCTACAAGCGAGGAGCAGCTCCGCGAGATGGCGGCCCGCAAGGAGTCGGAGAACTACCAGCACGCGCTCGTGCGCTGCGACAAGTGTTTCAAGGGCTTTCTGTCCATGTTCACTTATGAGAACCATATCAAAGTACACGACCCGGCGCTGGGTCCCAACGAGTGCCACTTCTGCTTCTGCCGGTTCAAGTGGCCGAACAAACTGCGCACACACCTCATCGAGTGCCACCAGCTCAAGTACATTTGCAAGGAGTGCAAGCTGGTGATTCGCGGGCGCTACATGGCGGTGATGCACGCGCAGTTCCACGCCGGAAAAACCTGGGAGTGCAAACACTGCCCACTCACATTCAAaaaacaatcaacgttttACACGCACCTACGAATAAATCACTCGACGCAGAACGCGCTAGGGGGCACCTGCGATATTTGTGGCGAGACGTTTACGGGCGCAATGGGACTGCGTATGCACAAGACTCAGACACACAACAAGAAAGAAATAAAGGCGCTTAAATGTACAATATGCAAGATACAGTTCGAAAACAAGGAGGCGCTCGACCGACACTTTCAGCCTCATAACGACTGTGATCCCAAATTGCGTTTCTGCGAGACGTGCGGCTGTCCCTTCGCTGACGAAGACCAGCTGAGCCTCCACCGTCAGCACGTGCACGGAGTCGAGATTTACAAGTGTGACGACTGCAACAAATCATTCTTGTCAAAATCCTCCCTATCGACGCACATCGACCGCGTGCATTTAAACATAAAGCCCCGTTTCCGGTTCTACAACTACAAGAAGAGCGCCCGGCCCGGCGTCAAGCTAGACTACATGTGCGAGACCTGCGGGAAGGCTTACACGAACTACAAGAGCGCCCGGCCCGGCGTCAAACTAGACTACATGTGCGGGACCTGCGGGAAGGCTTACACGGTGTATGGCACTAACACATACAGCTGCGAATACTGCAGCAAACGTATATGTCGCTGCAATATTACTTTACAGCCTTTTGTAGAACTACAAGAGCGCTCGGCCCGGCGTCAAACTAGACTACATGAGACCTGCGGGAAGGCTTACACGGTACATCCGTGCTACAAGAAGAACGCGCGGCCTGGCGTCAAGCTAGACTACTCATATAAAGCCACATTTCATGTTATTCGCCAGTGCTTCGCGCTCCTGAAGACGCATCAGATGACCCACACCGGGGAGCGGCCGTTCAAATGCTCGCTCTGCCCGAAGAGTTTCATCACCGCCTCACAACTAAAGGGCCACCGGGACAGCTTCCACGCGCGCATCCGGAAGTACCGGTGCCCGCAGTGCCCCAAAACGTTCCTCCGGCAGTCTTCCATCTACAAACACCGCCTGATCCACACGGGTGAGAAACCATACGAGTGCAGCATATGCAGCAAGGCGTTCACGCAGTCTGGGTCGCTCACCACGCACGTCAAGTACGTGCACATGAAACTGAAGCCGCCGCCCCGGAAACGGAACAAGGCCATCGACAAGGCTTATTAG
- Protein Sequence
- MTTIKLELEAEEPQACRICLVTDVKLYGIYEQRLDAAFLDITGTTLSVGDGLPRQLCAECASRLRRSLDLRLRSCRAHDILTQCLAEQNYITTDYIRGLDRVSLCLLPAEDKDLEAAEPYAPLEEPYPQPSLQDYLDGDISNDSSQLLSTFCTRALRQDDLTDVKDDSYIELPVVGEMVELDEKLGEMKPVGTSIKRERGVKRKRKEKSIKREKKKGKTRKKRRSIEEEPEVKQEKPGVEWVARKKAPYKRKKKGFKRYFMCEEDYAKFEERYNIQVVRLSEEEQLREMAARKESENYQHALVRCDKCFKGFLSMFTYENHIKVHDPKTSATSEEQLREMAARKESENYQHALVRCDKCFKGFLSMFTYENHIKVHDPALGPNECHFCFCRFKWPNKLRTHLIECHQLKYICKECKLVIRGRYMAVMHAQFHAGKTWECKHCPLTFKKQSTFYTHLRINHSTQNALGGTCDICGETFTGAMGLRMHKTQTHNKKEIKALKCTICKIQFENKEALDRHFQPHNDCDPKLRFCETCGCPFADEDQLSLHRQHVHGVEIYKCDDCNKSFLSKSSLSTHIDRVHLNIKPRFRFYNYKKSARPGVKLDYMCETCGKAYTNYKSARPGVKLDYMCGTCGKAYTVYGTNTYSCEYCSKRICRCNITLQPFVELQERSARRQTRLHETCGKAYTVHPCYKKNARPGVKLDYSYKATFHVIRQCFALLKTHQMTHTGERPFKCSLCPKSFITASQLKGHRDSFHARIRKYRCPQCPKTFLRQSSIYKHRLIHTGEKPYECSICSKAFTQSGSLTTHVKYVHMKLKPPPRKRNKAIDKAY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -