Basic Information

Insect: Cydia amplana
Gene Symbol: -
Assembly: GCA_948474715.1
Location: OX419678.1:4734182-4784786[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.32 17 6.6 0.1 2 23 495 516 494 516 0.93

2 14 0.075 4.1 8.5 0.1 1 23 526 549 526 549 0.95

3 14 0.27 15 6.8 4.0 2 23 751 772 750 772 0.95

4 14 2.7 1.5e+02 3.6 0.5 1 23 784 808 784 808 0.89

5 14 2e-05 0.0011 19.8 1.0 1 23 814 838 814 838 0.99

6 14 0.053 2.9 9.0 0.2 1 23 844 866 844 866 0.93

7 14 0.0035 0.19 12.7 3.4 1 23 872 894 872 894 0.98

8 14 0.12 6.6 7.9 0.3 1 23 1001 1023 1001 1023 0.97

9 14 3 1.6e+02 3.5 7.2 1 23 1030 1052 1030 1052 0.95

10 14 0.002 0.11 13.5 1.8 1 23 1091 1114 1091 1114 0.95

11 14 0.14 7.5 7.7 1.1 1 23 1121 1144 1121 1144 0.97

12 14 3.9e-05 0.0021 18.9 2.4 1 23 1178 1200 1178 1200 0.97

13 14 0.00028 0.015 16.2 0.1 1 23 1206 1228 1206 1228 0.97

14 14 0.012 0.62 11.1 2.3 3 23 1236 1257 1236 1257 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.32	17	6.6	0.1	2	23	495	516	494	516	0.93
2	14	0.075	4.1	8.5	0.1	1	23	526	549	526	549	0.95
3	14	0.27	15	6.8	4.0	2	23	751	772	750	772	0.95
4	14	2.7	1.5e+02	3.6	0.5	1	23	784	808	784	808	0.89
5	14	2e-05	0.0011	19.8	1.0	1	23	814	838	814	838	0.99
6	14	0.053	2.9	9.0	0.2	1	23	844	866	844	866	0.93
7	14	0.0035	0.19	12.7	3.4	1	23	872	894	872	894	0.98
8	14	0.12	6.6	7.9	0.3	1	23	1001	1023	1001	1023	0.97
9	14	3	1.6e+02	3.5	7.2	1	23	1030	1052	1030	1052	0.95
10	14	0.002	0.11	13.5	1.8	1	23	1091	1114	1091	1114	0.95
11	14	0.14	7.5	7.7	1.1	1	23	1121	1144	1121	1144	0.97
12	14	3.9e-05	0.0021	18.9	2.4	1	23	1178	1200	1178	1200	0.97
13	14	0.00028	0.015	16.2	0.1	1	23	1206	1228	1206	1228	0.97
14	14	0.012	0.62	11.1	2.3	3	23	1236	1257	1236	1257	0.96

Sequence Information

Coding Sequence: ATGACGGAGGAACAGCCTCCGCTGATGCTCTGCTTAGAGAATGCCGCCGGTGAGGAGGTCTCGCTCAACATTGAGCCTAATGATGACTTCCACTCCTTCCTGATAAAGGCCAATGAACTACTCGGTTACGAAGTAGACCTAAATTCATTAACCAGAAACAAGCCAGTGGCCTTAACGGACAACATTTACCAATTCCTGCTAAATTCTGAAAACGGCCTCCTAGAGTACCCTATGCCACAAACATTTGATCAAATGCTAGAACCAAATGATGCTACAGATGCCTTAGAATATGTCCTAGGTGATGGAACACAAATCAAAGCTTCACAGATACATTTCGACAATGAGGATCCACCTTTTGATTTTGTAGCAGAAAAAATACCATTTGTCAAATATGTTGATGATTATATAGATGATGTTGAACCATCAAAAGAAATTAGCACGAAAATTATCAATATAGTCGCTAGCCCTGTGTCTAAATTGCTCAGTACTTCAAGTCCAAAGAAACCTTTCATAAACAGCATACCTTTTAAACTGGTTAACAATAATGCTTCAGGATTTGCAGCTCAATTCCACAAATTCGTAGAATCTAGTATTGATAAAACTTTTACGCCGCTTAATCCAGTTACAACTAGAAATAAGTCTCCGAGAAGTCTTATCAGAGACAACTATAATAAATATGAAGACAACATTTATAATAAAACTGATTTCATAACACGAGATGAAGTTTTAAATATGTTTAAAGATACTCCGGTAGTACCTTATGAGAGCCAAAGCTTCAGTGATAAGAGGAGACGCAAAACTGACCCTTCACGCCCTATTAATAAGACTGCGAATGCTAAAACAATGCCGTACATAGATGTTGATGGTACTTTAATAGGTCAAAATGAGAGTCAAAACTGTTTCATCTGTGAGAAGTTTGTCAATAACAATATGGATAAGCTTTATTTATTTGACAATGAAGATCAGAAACTACACAGATCATCTCCGCAAAAGAAATTATCCACCCAATTGAAAATTATCTGTGAACAATGCTTAGACAATAATTTTAAACCATCTAGATTAAAAAGCCCCAGCAAGAATCTAAATCCAGACGAATATTTGGTAATTAGGAACAACCAGCAATATATATTTCAGAAAACAAATTCCATAGACTTTAAAAATATAAAAAGCAGTTTCGTAAACATTGGTGAAGCAACAGCTATAATAGACAAGATAGAAACAGAAATCTTAAAAGGAAATCAAGTCAAACAAACTGATTTTGTCAAAGTTGAAATCGATTCGAATGGAGAAATCATATCTAAAGATGATGCGAAAGAATCAAATTCAGAATCATATATTTTTAAAGATGGCAGCTCTAGTGATGTCGAAATAATTGAGGGACCGGAAATAGACGATGTCATAGACAATTTAGAGGAAGCAGATGAGGAAGTAAAGGAGTTTTTAGGGATGTATCAGAGTGACAATAATGATACTAGTGAACTAAAATGCAGGTTTTGCGAGCGCGTCTTTGCAGAGTTCGCCGAGTTGATGGAGCATGGTGACGTTCACAAACACGTGACGGAAGATGGTGAGGTGTACCCGTGCCCTTTGTGTTTTTACGGATACGCCAATTTCAAATGGCTCAAAGGCCATCTTAAAGCAGCCCACGATAAACCTAAGAAACCTCCAGCAGAAAGCAATAACGACGATGCAAAGGATGAATCGCAGACACCGTCTGAGCAGTCGCCAGTGGCTAAAAGAACTAGGAGTAACTCTAAGAAAAATAACGAGGGTGATAAAGATGAAGCAGCAAAGTCAGAGGAAGATCCTGCAAAATCAGTGGAACCTGAAAATGATAATCAGGAACGCAAAATGGAAATTAAGTTAGAAATCAAGCAAGAAGCGTTAGATACAAGCGACGAAGAGGCAATATGGATCGTGCATACTGAAGACACGCCGGCCGACCAGCTCCACTCGCTTCTACATGGTGATGAAAAAACCGAAGACGCAGTGTTCAAGAAACCACAAAAATGTGCCAAATGCAGTCAAATCACGGTGGATATGTCCACACATAAATGCAAAAGGCGAGCCCGGAAACGGAAGTGCTTGGGCAAGGACGAACATGTCACTTTGTCCTCCCAGAAGGACCCTGTAAAGAGGCCACTAGGTAGACCGAGACAAGGCACGGACTCTGGTGAAAACGATTTACTGGTTCCCAGGCCTCGTAATAAGAAGAAAGCCACTGAACCGACATCAGACCCTCAGATCATGACGTGCCATAACTGCAATGAGTCCTACACGTCCAAAGTACGATTGAAGTTCCATATGCAATTCCACGACAACACAGAGATGCTGACCGCCAACGGACAGTACACGTGCCTAGAGTGCCCCGGAGTCGCTTTCACGACAGAGACAGAGCTATTCGACCACGTGCACTTCCAACATGACAAGCAGAACCGCTACCAGTGCCCTGTCAAGGATTGTGGGAAGACATTCTTCCTCAGAGCGTCCCTGACGAAGCATAGCCGCACGCACACAGACACACGCCGCTACGTGTGCGGCACTTGTGGGAAGAGGTTCCTGGACAAACAGACCTTGGACGAACATGGAGTCACGCATTTACAGATCAAGCCATACCAGTGCCACATCTGCATGAAACAGCTGACTCGGCGCTCTCGCTTGCGCATGCACATGCGCGCGCACGAGGAGTCGCTCTGTCCCGCTCTGGTGCCAGTCTGCGCCGCGTGCCGCCGCGCCTTCCAGAACGTTCCCGCCGCTGTGGAGCACGTGAAAAAGTCACCGGAGTGTCTCGGGGCGTTCTCGTGCGACTTGAACGAAGATGAAAAACCTACCGCCGTGTTATCGCCCACTAGTGGGCTAGTTAGACCCACACTCGACGAACCACCGGGCCAACAGTACCGCATAGAGCGCGAGGCGCAGTGCGCAGGCGCCGCCGCGCTGCTGGCGCCGCTCCCGGCGTCCCTGCGCACCGTGGTCCGCGCCGTTACAGTCGACAAGGCCTTCCGCTGCGAGTTCTGCGAGGATGTGTTTTACCTGGAGGAGGATTTGAACAAACACCGAGCTATCCACAAAGGGGTCAAGAACCCTTTCACTTGCCACATCTGCAAAGTCAGCTTCGCCACTTATTCTAGATGTACAACACACAAGACTACCCACGGCTTCTACAAGCGCTCGTTGGCGGACGTCAAGAGCTCGGGCCCGAGCCGGGCGGACTGCGGGCCGTCCGCGCGCGGCGTGCTCGGCTACGGGGGGTTCCCTGTCGTCAAACACTTCCTGTGTGAGGACTGTGGCCGGTCATATCTGCACTGGACTTACTTGCAGGTGCATCGCAGAATGAAACACGCGAACGACAATTTCATCTACAAGTGCATTCACTGTGAGGAGACCTTCCCTAACAGTTGGAGCGTGGCCTACCACAGAAAAAAGGTGCACGGCAAACCAACAGAAAAGGGAACCGGAGCCACTAAAACTGTCCACACCGACTATAGAGAGGTCCATGGACAAGATACGCAGTATCCGACCTCTCGATCGCACACCTGCACCGTCTGTGGCCACGTTTTCCGCACTGCGTCCATGCTTACTGAACACTCCAGGATTCACACCGGCGAGCGGCCGTTTCCGTGCGATGTGTGTGGGGTGGCTTTTAGGAGAGCAACGGCGATGCGCAACCACCGTTTGATCCACACGGGCGTCCGAGCGTGGGGCTGCACGCGCTGCCCGAAGCGTTTCCGGATCCGCTCCGACCTCAACACGCACTCGAGACTCAAGCATCCGCTGCATCTAGCTGTTATAGAGGTGCCTGGCCTAGAGCCGAGCCCGGAGCAGGTGCTGCAGGCGCTCGCCGTCAACAACATCGCCAGGGAGAGAGTGCTTGAAATCACTAAGGTCTCCTTCCCCAAGGGCTCTTGCGCCGTGGTCCCGGACTGCGCGCGCGCGCTGGCGCAGCTGCCCGCGCCCGCGCGCCGCGCCGTGCCCCAGCCCGCGCCGGTCTGCCACCACGACAACTACGCCGCCGGTAACATTGCTATACTTGGTCAAGCAGATCTTGACCTCACAGGCTTGAACGTCGAGATGGTTTTCCAAGACAACCTGCTCGAGCAACCCGCGCTCAGTGCTCGCCAGATGCTGGACCCCAGACTCTTATTCAATACCCCGCCGCAGCAGATGCAGACTGATGGCAACCATTAA
Protein Sequence: MTEEQPPLMLCLENAAGEEVSLNIEPNDDFHSFLIKANELLGYEVDLNSLTRNKPVALTDNIYQFLLNSENGLLEYPMPQTFDQMLEPNDATDALEYVLGDGTQIKASQIHFDNEDPPFDFVAEKIPFVKYVDDYIDDVEPSKEISTKIINIVASPVSKLLSTSSPKKPFINSIPFKLVNNNASGFAAQFHKFVESSIDKTFTPLNPVTTRNKSPRSLIRDNYNKYEDNIYNKTDFITRDEVLNMFKDTPVVPYESQSFSDKRRRKTDPSRPINKTANAKTMPYIDVDGTLIGQNESQNCFICEKFVNNNMDKLYLFDNEDQKLHRSSPQKKLSTQLKIICEQCLDNNFKPSRLKSPSKNLNPDEYLVIRNNQQYIFQKTNSIDFKNIKSSFVNIGEATAIIDKIETEILKGNQVKQTDFVKVEIDSNGEIISKDDAKESNSESYIFKDGSSSDVEIIEGPEIDDVIDNLEEADEEVKEFLGMYQSDNNDTSELKCRFCERVFAEFAELMEHGDVHKHVTEDGEVYPCPLCFYGYANFKWLKGHLKAAHDKPKKPPAESNNDDAKDESQTPSEQSPVAKRTRSNSKKNNEGDKDEAAKSEEDPAKSVEPENDNQERKMEIKLEIKQEALDTSDEEAIWIVHTEDTPADQLHSLLHGDEKTEDAVFKKPQKCAKCSQITVDMSTHKCKRRARKRKCLGKDEHVTLSSQKDPVKRPLGRPRQGTDSGENDLLVPRPRNKKKATEPTSDPQIMTCHNCNESYTSKVRLKFHMQFHDNTEMLTANGQYTCLECPGVAFTTETELFDHVHFQHDKQNRYQCPVKDCGKTFFLRASLTKHSRTHTDTRRYVCGTCGKRFLDKQTLDEHGVTHLQIKPYQCHICMKQLTRRSRLRMHMRAHEESLCPALVPVCAACRRAFQNVPAAVEHVKKSPECLGAFSCDLNEDEKPTAVLSPTSGLVRPTLDEPPGQQYRIEREAQCAGAAALLAPLPASLRTVVRAVTVDKAFRCEFCEDVFYLEEDLNKHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADVKSSGPSRADCGPSARGVLGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANDNFIYKCIHCEETFPNSWSVAYHRKKVHGKPTEKGTGATKTVHTDYREVHGQDTQYPTSRSHTCTVCGHVFRTASMLTEHSRIHTGERPFPCDVCGVAFRRATAMRNHRLIHTGVRAWGCTRCPKRFRIRSDLNTHSRLKHPLHLAVIEVPGLEPSPEQVLQALAVNNIARERVLEITKVSFPKGSCAVVPDCARALAQLPAPARRAVPQPAPVCHHDNYAAGNIAILGQADLDLTGLNVEMVFQDNLLEQPALSARQMLDPRLLFNTPPQQMQTDGNH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00412048;
90% Identity: -
80% Identity: -