Basic Information

Insect: Cydia amplana
Gene Symbol: Znf296
Assembly: GCA_948474715.1
Location: OX419654.1:11620146-11629581[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.3e-05 0.0018 19.1 1.6 2 20 183 201 182 205 0.91

2 9 5 2.7e+02 2.8 0.3 6 23 249 266 245 266 0.88

3 9 0.17 9 7.5 0.1 2 20 345 363 344 367 0.88

4 9 0.05 2.7 9.1 0.1 2 21 373 392 372 393 0.92

5 9 0.00021 0.011 16.6 0.4 1 23 401 424 401 424 0.97

6 9 1e-05 0.00056 20.7 2.9 1 23 445 467 445 467 0.98

7 9 1.7e-05 0.0009 20.0 4.6 1 23 474 496 474 496 0.98

8 9 1.5e-07 7.9e-06 26.5 2.3 3 23 510 530 508 530 0.96

9 9 3.4e-05 0.0018 19.1 3.2 1 23 536 558 536 558 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.3e-05	0.0018	19.1	1.6	2	20	183	201	182	205	0.91
2	9	5	2.7e+02	2.8	0.3	6	23	249	266	245	266	0.88
3	9	0.17	9	7.5	0.1	2	20	345	363	344	367	0.88
4	9	0.05	2.7	9.1	0.1	2	21	373	392	372	393	0.92
5	9	0.00021	0.011	16.6	0.4	1	23	401	424	401	424	0.97
6	9	1e-05	0.00056	20.7	2.9	1	23	445	467	445	467	0.98
7	9	1.7e-05	0.0009	20.0	4.6	1	23	474	496	474	496	0.98
8	9	1.5e-07	7.9e-06	26.5	2.3	3	23	510	530	508	530	0.96
9	9	3.4e-05	0.0018	19.1	3.2	1	23	536	558	536	558	0.99

Sequence Information

Coding Sequence: ATGGCTTCGTCTCTAAACGTTATAAAATTGACCAAATTAGAAAATGTTTGTAGAACGTGCTTATCAAAAGAAATAGTACCGCAGTCTATATTTGATGTTTACTCTGGATCAATTACTTTCGACTGTGTAATAAACGCAGTAACTGGTTTAAAGATTGAACATGGTGATGGGTTTCCATCAAATATTTGCCAAGGGTGCAAGGACAAAGCCATCAGTGCATTTGATTTTAAGAATAAGGCTCAAGAAACACATGATGCTCTACAGACTCTGATTAAGAAAGCTATCAATACAACACCACATGATGTTAAAGAAGAGCAGCCAGCAGATGATACTGATGATGGCTTGGATATTGACTTTTCTCTGCCTGTGACACCCGAAAATTGTAGCGAGTTAGCTTCGATTAAAAATGAAAATGAGGGTGATCTTGGCCATCAATGTAACCAGCAGTGTAAAAATTGTCCTGATGTGTTTGATATGTCTACTAGACTTGGAGAACATGTGGATAAAAAATGTGTGAAAGTGGAGTATGAAGATGGACAGAGTACATACTGTCCTCTTTGTGGTACGTGCTTTGACAATTCAGACAGTTTAACAAAACATATGTGGACAAGTCATGCTGATCTTATGGGACCAAAGAAGAGAGGCAGACCAAAAAAGTTGCTGACCAGTACCATATTAAGTAAATTATCGGAAAATGGCTGCCACACGAAAGCCCGCCCTATTAAAACAAAAAGCTGTATATTCTGTAAGGATGAATTTAAAACTCAACTAGAACTGAGCGGGCACATGATGGAACATAAAGCTACAAAGATTCCATGCTGCATGCTATGCAAGAAAATGTACCTCAACATATTGAACTTTGAGCAACATGTCTGTTTCGATGATAGAAATAATTCAATTAAAATGTTAAATGAACATGAAACATTAAGTATTCCAAGTGACAATGCCAAAGTTCTTAACTATCTAACAGAGGTACTGCTGCAAGACGTGTTGGATCCAAATGGTGATATGGAAAACATGAATGTTCTTAAAGTATGCAGCATTTGTAATGAAGTGTTTTTGTCGGAAAGCGATCTGGCTAGTCACAACGATGCTGAACATCCAGAACTTTCGCAGCGATGCAACCTTTGTAGCAAGGTATTTGCATCAGTCAAATCAGCCGCCCGCCATAGGAATATATGCAAGCAAATAGAAAGAAAATATATTTGTAGTACTTGTGGGCTTAAATTTGCTTACGAGATTTCGTTAAATAAGCACATATTGCGGTTCCACGAAGGCCAAAGTGTATCAGTGAAGTTTATGGATCCTAAAACGAAATCGGACGAGAGACAATATCAATGTGATACTTGTAAAAGAAGTTTCTACAGAAAAGATTTACTTGCCAGGCATACTAAACAGCACATGCCGAGTGAAAAACTATTTGAATGTGATGTGTGTAAAAAGAAGTTTCATAGAAGGGACAATTTACGTTCTCACAAGCGCGTTCACGAGGCCCACCGCGATAAAAGTGCGAGCAACAACTGCTTGTGCCTGTACTGCGGCCGCAGTTTCTCCAACTCCTCCAACCTGATCGTTCACATGCGGCGGCACACCGGCGAGAAACCTTACAAATGCGACTTTTGTGGCAAAGGTTTTCCCCGGTCATCGGATCTGCAATGCCATAGACGCTCGCATACAGGAGAGAAGCCATGTATCTGTGTGGTTTGTGGAAAAGGTTTAAAGTATTTTTTTATTATGGTTAATAATATCTTTAGGCCCGGCGTCCACTATCGCCATGGCACGGCAAGGGATCCTTCGGCATATAGCCGAGGCGTCCTCAGGCATACCTAG
Protein Sequence: MASSLNVIKLTKLENVCRTCLSKEIVPQSIFDVYSGSITFDCVINAVTGLKIEHGDGFPSNICQGCKDKAISAFDFKNKAQETHDALQTLIKKAINTTPHDVKEEQPADDTDDGLDIDFSLPVTPENCSELASIKNENEGDLGHQCNQQCKNCPDVFDMSTRLGEHVDKKCVKVEYEDGQSTYCPLCGTCFDNSDSLTKHMWTSHADLMGPKKRGRPKKLLTSTILSKLSENGCHTKARPIKTKSCIFCKDEFKTQLELSGHMMEHKATKIPCCMLCKKMYLNILNFEQHVCFDDRNNSIKMLNEHETLSIPSDNAKVLNYLTEVLLQDVLDPNGDMENMNVLKVCSICNEVFLSESDLASHNDAEHPELSQRCNLCSKVFASVKSAARHRNICKQIERKYICSTCGLKFAYEISLNKHILRFHEGQSVSVKFMDPKTKSDERQYQCDTCKRSFYRKDLLARHTKQHMPSEKLFECDVCKKKFHRRDNLRSHKRVHEAHRDKSASNNCLCLYCGRSFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCICVVCGKGLKYFFIMVNNIFRPGVHYRHGTARDPSAYSRGVLRHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00412874;
90% Identity: iTF_00410694; iTF_00412874;
80% Identity: -