Camp005111.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419679.1:1180035-1182702[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0015 0.081 13.9 1.0 1 21 3 23 3 24 0.95 2 18 0.11 5.9 8.0 0.1 2 23 66 88 65 88 0.95 3 18 3.2 1.7e+02 3.4 1.2 2 23 114 136 113 136 0.92 4 18 0.032 1.8 9.7 0.3 2 23 159 180 158 180 0.95 5 18 0.00031 0.017 16.1 0.0 1 23 184 207 184 207 0.97 6 18 0.15 8 7.6 1.6 1 23 211 234 211 234 0.97 7 18 0.33 18 6.5 1.1 1 23 239 264 239 264 0.94 8 18 9.5 5.1e+02 1.9 1.5 2 23 322 344 321 344 0.93 9 18 0.003 0.16 12.9 0.3 2 23 414 435 413 435 0.96 10 18 0.033 1.8 9.7 0.5 1 21 439 459 439 460 0.94 11 18 0.44 24 6.1 0.2 1 23 501 524 501 524 0.93 12 18 0.17 9.1 7.4 0.2 2 23 550 572 549 572 0.95 13 18 0.026 1.4 10.0 1.6 2 23 596 617 595 617 0.94 14 18 6e-05 0.0032 18.3 0.0 1 23 621 644 621 644 0.97 15 18 0.0091 0.49 11.4 0.5 1 23 648 671 648 671 0.98 16 18 4.6 2.5e+02 2.9 1.3 1 23 676 701 676 701 0.91 17 18 0.099 5.3 8.2 5.7 1 22 710 731 710 733 0.88 18 18 0.0042 0.23 12.5 0.2 1 23 743 766 743 766 0.96
Sequence Information
- Coding Sequence
- ATGAATTTTATTTGTGATAAGTGCGGGACTACTTTTATTTCCGACCACGCTTTACGAGATCACCACCGGCAGGTGAAATGTTGTCGGACGGCGTATAAAGCTCGCAACGGGGTGGTTATGAGGTCGAGACGGAATGCGGAGTTGATTCTCCAGTGGTCTACGGCGTGTCCATTTAGAACGTGGAAGAGTAATCTTAGTTGCGTGTTCTGCCGCCTTCAGACGAGCGACCCGGTCGGGCTTCGAAGCCACATGGCGACGCTCCACGCCGACTATCATGTTCAAGACGCATTTTATAGAAAACTTGGAAAGGAGTATCTCAAAATAGACATCACTGACCTACATTGCAAGCTATGCTTCATGCCTATGGAATCTTTAGATACTTTAACGAATCATTTAAAGAATGACCATCAACAGTCTATTACAGATGGCCAGCTTGGCGTCATACCTTTTAGACTTAATGATGGATCAATTTGGAAATGCACGATGTGTCCGAATCAGTTCCAAGACTTTGGGTCTCTAGAAAAACATACCATAGAACATTTGCAAAACTATGTTTGCGACACTTGTGGAGAAGGGTTCATAACAGAATCTGCAATGATAGCACATACAAAGATACCACATGAAAACAAGTATAACTGCAGCCGTTGTGTGGCTACGTTCATCTCCCTCGACGAGAGAAATCATCATGTAAAAACACAACACACGAACACACCATACATGTGCAACTACTGTAAAGATAAACCCCGTTTCTCTAATTGGGAGTTGCGTAAGAAACATCTCAAGGAAGTTCACAATTATACGTCTGGGCCCAGTAAGGAAATAGCTGGACATACTGAGAAAGAACGTAAAACGAAAAAGAGACTGTTCGAAAGATCTGTTAACCAGAACCCGCAGAGGCAAAACGCTGTATTGATACTTAGGTACTCTACAGCGTTCCCCTTTAAGACACGGTTTAATAGAATTGTCTGTTCGTACTGCCATGACGAGTTTGAACCGATGACGGCGTTGAGGTGTCACATCAAAACCGACCACGTTAGTGCTGATTACAACAGCGCCTTTTACAAGGTGGTAGACGACCTAAAAATCGACATAACGGAATTCAAATGTAACTTATGTGCTCAAGAAATGCCGAGCGTCGATTTCTTTATGAACCATTTGTCCCGCGACCACGGCAAAACTGTCAACTTTGACGTTCCGTTTGGAGTATTACCTTACAAGCAGGGCCCGTCCGGGTTGTGGATGTGTCTGGACTGCGACAAAACTTACTCTGAATTCTCTCAAATAAACGGACATTTGCGCAGTCACGTGAAGATATTCACTTGCGACAAATGCGGGGCGACCTTCCTCTCTGAGCACGGCTTGCGACAACATGAGCGTAACTTTAAATGCTACAAAGCCACTTATAAACCTAGATTCGGAAAAGCGCTGAAGCATCGTAGCAATACTGAAATTATATTGCAATGTTCTACAGCGCGTCCGTTCAGAACGTGGGGGCAGAATTTCAACTGCGTATATTGCCGCGTACAGTCCAACGATCCTAATGGCTTAAGAATGCACATGACAGCCAGACACGCCAATACCAATATCCAACACGTTTTCAGTCGAAAACTGCGGAAAGAGTTCCTTAAAGTTGACATCACTGATCTTCAATGCAAGCTCTGCTACTTACGAATCGACACGCTAGACGATCTTATTACCCATCTCAAAAATGATCACAAACAGCCTATCAACGCTGACGTGCAACCCGGAGTTTTGCCATTTAAATTAAACGATGGATCCCACTGGAAATGCGCTATTTGCACTTGCCAGTTCTCAGATTTCATCTCTCTAAAGAAGCACACCGCTGAGCATTATCAGAACTTCGTCTGCGATACATGCGGTGAAGGATTTATCACAGAATCAGCGTTAATAGCACATACGAAAATCCCGCACGACAATAAATACAGCTGCAGCCGTTGCGTAGCGACGTTCTCTACTCTAGAAGAAAGGAACATCCACATCAAAACACAGCATACAACACTACCATACATGTGTGCACATTGCAAAGACAAGCCTCGTTTCGCAACATGGGAATTACGCAAGCGTCATCTCATGGAGTTCCATAACTATAAGCCTGGTGCCGAAATGTACGAATGCACTACTTGCCATATGACCTTCAAGACGAGGTCACAGAAATATCATCACAATGTTAAAGCCCATAGAACTAAGAAGGAGACAGAATATGGGTATCCGTGTGGTAGTTGTTCAAGAGCCTTCGCCACTAAACTGTCCCTAGATAAGCATATTGCTAAGAAACATTTTCACGTTTGA
- Protein Sequence
- MNFICDKCGTTFISDHALRDHHRQVKCCRTAYKARNGVVMRSRRNAELILQWSTACPFRTWKSNLSCVFCRLQTSDPVGLRSHMATLHADYHVQDAFYRKLGKEYLKIDITDLHCKLCFMPMESLDTLTNHLKNDHQQSITDGQLGVIPFRLNDGSIWKCTMCPNQFQDFGSLEKHTIEHLQNYVCDTCGEGFITESAMIAHTKIPHENKYNCSRCVATFISLDERNHHVKTQHTNTPYMCNYCKDKPRFSNWELRKKHLKEVHNYTSGPSKEIAGHTEKERKTKKRLFERSVNQNPQRQNAVLILRYSTAFPFKTRFNRIVCSYCHDEFEPMTALRCHIKTDHVSADYNSAFYKVVDDLKIDITEFKCNLCAQEMPSVDFFMNHLSRDHGKTVNFDVPFGVLPYKQGPSGLWMCLDCDKTYSEFSQINGHLRSHVKIFTCDKCGATFLSEHGLRQHERNFKCYKATYKPRFGKALKHRSNTEIILQCSTARPFRTWGQNFNCVYCRVQSNDPNGLRMHMTARHANTNIQHVFSRKLRKEFLKVDITDLQCKLCYLRIDTLDDLITHLKNDHKQPINADVQPGVLPFKLNDGSHWKCAICTCQFSDFISLKKHTAEHYQNFVCDTCGEGFITESALIAHTKIPHDNKYSCSRCVATFSTLEERNIHIKTQHTTLPYMCAHCKDKPRFATWELRKRHLMEFHNYKPGAEMYECTTCHMTFKTRSQKYHHNVKAHRTKKETEYGYPCGSCSRAFATKLSLDKHIAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00028037;
- 90% Identity
- iTF_00149786;
- 80% Identity
- -