Camp000489.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419680.1:1058513-1074637[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0067 0.37 11.8 0.8 1 23 305 327 305 327 0.96 2 20 3.9 2.1e+02 3.1 2.2 1 23 334 356 334 356 0.94 3 20 1.3 71 4.6 4.9 1 23 360 382 360 382 0.96 4 20 3.8e-05 0.0021 18.9 2.6 1 23 387 410 387 410 0.96 5 20 0.0033 0.18 12.8 0.1 2 23 416 438 415 438 0.94 6 20 1.8 98 4.2 0.1 1 21 449 469 449 474 0.91 7 20 0.2 11 7.2 1.4 3 23 480 501 479 501 0.91 8 20 5.6e-05 0.003 18.4 2.9 1 23 506 529 506 529 0.98 9 20 0.34 18 6.5 0.0 1 19 549 567 549 568 0.87 10 20 5.5 3e+02 2.7 0.4 1 11 576 586 576 590 0.86 11 20 5.5 3e+02 2.7 0.4 1 11 699 709 699 713 0.86 12 20 5.5 3e+02 2.7 0.4 1 11 798 808 798 812 0.86 13 20 5.5 3e+02 2.7 0.4 1 11 872 882 872 886 0.86 14 20 5.5 3e+02 2.7 0.4 1 11 946 956 946 960 0.86 15 20 5.5 3e+02 2.7 0.4 1 11 1020 1030 1020 1034 0.86 16 20 0.34 18 6.5 0.0 1 19 1094 1112 1094 1113 0.87 17 20 0.00039 0.021 15.7 0.3 1 23 1121 1143 1121 1143 0.97 18 20 0.00038 0.021 15.8 1.6 1 23 1151 1173 1151 1173 0.98 19 20 1.7e-05 0.00093 20.0 1.0 1 23 1179 1202 1179 1202 0.96 20 20 0.00047 0.025 15.5 0.2 2 23 1210 1232 1209 1232 0.93
Sequence Information
- Coding Sequence
- ATGAATATACAAAATGTTGCCTCAAATGAGGATTCCTTGCTGGCTTGTCGAGCTTGCCTCATTACCGACTGTAAATTGTACAACATTCATGATTATCAACTCGGTGGTGCTTTCGCTCGCATCTCAGGAGTCCCTGTGCACAAAGATGGGCTCCCGCAGCACCTCTGTACCTTCTGCAGCGCGCAGGTGGCCCGCTTCGAAGCCTTTCGAGAAAAGGTGCTCCGCTCACACTTTTGTATGAGGGCAAAACTATGCGAGAGAGAGTTGGATACAAACACCATTCGCACCATTGACCGCGCCCACTTCAAGCTCGTCAACAACCTAACCTTCACCAAACCACACGTCGAGTGCATAAACCTGAAGACCCCCGAAGACATCAAAAACGAACCCAATGCAGACACAGACGACACGAAAGATAATATCGTCGAGAATCCGGATCTCAAACAAGAAGATGAAAAAAATGATGATACAGAACTTGATAATGATGCCGTTGAAGACATATTCATCCTCACAGATGTCGAAGACATTAAAAAGAGAAGGAGAAGAGTAAACGCCAAGAAAAAGATGAAACTAGAAAAGTTTGATGATGACGATGACGTCAAACTTGTAAATTTTGCTAAAAAGAGACCGAATAGGAAAAAAGAGAGTGTTCAAAAGAAAAATGTTGTTAAAAAGAGAGAATTAAAAAGTAAAAATGCTGACGATAATCCAAAACCGAAAGTTAAGAAAGAAAGGAAGTTAAAGGAGGACAGTAAAAGAAAGTTCCGGAATCCTGAAAACGGTTACATGCCGGTGTTTGACTTTGCTACGTTTGAGAATGCTTTTGAAGTGCGTGTTGTCACTTTGAGTAAGGAAGACCAACTGGAGGAGATTGCAACGCGCAAAGAGTCCGCCAACTACTTGGAGTCCCCGTTCCAGTGTCACGACTGCGGAAAAGGGTTTCTGGCTGAGGAGGCCTATAACAACCATCAGTTGCGGCACAGTCCGAGTGCGGGTCCATATGCCTGCGAAGTATGCAAGGTCCGCTTCAACATGCAGTGCCGGCGACAGGAGCACCAGGACATGCACCGGCTCAAGTTCTTCTGCAAGAACTGCAGCTTCGTCTCCAGAAACAGGCATCAAGCGAGGAGGCATTACGACATGCATGCCGGCAAAACGTTCGAGTGCAAACACTGCGGCAAGATGTTCAATAAGAGTTCAACGTATCTGTCGCACGTGCGGCTGGCGCATCCAGACATGCACGTGTCGTGCGACCTGTGTGGCGAGACCTTTGTCGGGCAGGCGGGGCTCAAGCAGCACAAGGCCAAGATGCACTCCATCGCCGAGAACATAAAACCACAAAAGTTCGAATGTGGCACGTGTTCAGCCACCTTCCTTAGCGTAGAAGCGCTGAACAGACACACAGACACGGCCGGCGAGCACAGAGACCTGCGGCCGTGCGAGCAGTGCGGCGAGAACTGTGCGAGCGAGCACAAGCTACAGGAACATGTCACAGAGACACATCCGAAGGAAACGTATCGGTGtgaggagTGCAACATGTCGTTCAAACGCGCGTCGGCGTACGAGCTGCACCACCGGCGCAAGCACCTCGGGCAGCGGTTCAGCGCCGCCGGCCGCCACGTGCCGCGCCGCACGCCCGGACACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGCGGTTCAGCGCCGCCGGCCGCCACGTGCCGCGCCGCACGCCCGGACACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGCAACACCGGCACGTGCCTACACACGACCTGCACACCGGCGCAAGCACCTCGGGCAGCGGTTCAGCGCCGCCGGCCGCCACGTGCCGCGCCGCACGCCCGGACACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGCAACACCGGCACGTGCCTACACACGACCTGCACACCGGCGCAAGCACCTCGGGCAGCGGTTCAGCGCCGCCGGCCGCCACGTGCCGCGCCGCACGCCCGGACACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGCGCCGCCGGCCGCCACGTGCCGCGCCGCACGCCCGGACACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGCAACACCGGCACGTGCCTACACACGACCTGCACACCGGCGCAAGCACCTCGGGCAGCGGTTCAGCGCCGCCGGCCGCCACGTGCCGCGCCGCACGCCCGGACACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGCAACACCGGCACGTGCCTACACACGACCTGCACCACCGGCGCAAGCACCTCGGGCAGCGGTTCAGCGCCGCCGGCCGCCACGTGCTGCGCCGCACGCCCGGACACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGCAACACCGGCACGTGCCTACACACGACCTGCACCACCGGCGCAAGCACCTCGGGCAGCGGTTCAGCGCCGCCGGCCGCCACGTGCCGCGCCGCACGCCCGGACACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGCGCCGCCGGCCGCCACGTGCCGCGCCGCACGCCCGGACACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGCAACACCGGCACGTGCCTACACACGACCTGCACCACCGGCGCAAGCACCTCGGGCAGCGGTTCAGCGCCGCCGGCCGCCACGTGCCGCGCCGCACGCCCGGACACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGCGCCGCCGGCCGCCACGTGCCGCGCCGCACGCCCGGACACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGCAACACCGGCACGTGCCTACACACGACCTGCACCACCGGCGCAAGCACCTCGGGCAGCGGTTCAGCGCCGCCGGCCGCCACGTGCCGCGCCGCACGCCCGGACACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGCGCCGCCGGCCGCCACGTGCCGCGCCGCACGCCCGGACACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGGTGAGTGTGTGCAACACCGGCACGTGCCTACACACGACCTGCACCACCGGCGCAAGCACCTCGGGAAGCGGTTCAGCGCCGCCGGCCGCCACGTGCCGCGCCGCACGCCCGGACACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGCGCCGCCGGCCGCCACGTGCCGCGCCGCACACCCGGACACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGCGGTTCAGCGCCGCCGGCCGCCACGTGCCGCGCCGCACGCCCGGACACTTCGTGTGCGAGCAGTGCGGCCGCGTGCTCACGTCCCGGCAAGGTCTGCGCTACCACCTGCGCGACCATAAGGGCCTCAACCTGAAGCTGTTTACCTGCCCCGAGTGTAACAAGACCTTCGCTGCGAAGCACATGAGAGATTGGCACATGCGGTCGCACACGGGTGAGAAACCATACCAGTGTCCCGAGTGCCCGCTCGCGTTCAGCCTGAACAGCAACTTCAAGCGTCACCACAAGGCGGTACACCTCGGGCAGCGTAAAAGCATTCCGTGCAATATCTGCGGGCGCGTGTTCACGACCACGTCGTGCGTGCGCGTGCACGTGAACGCCGTGCACCGCGGCATGCCGTGGCCCAAGCGGAACCGCGCCCGCGCCAAGCCGGACCCCAAGTCGCCGCTACCATAG
- Protein Sequence
- MNIQNVASNEDSLLACRACLITDCKLYNIHDYQLGGAFARISGVPVHKDGLPQHLCTFCSAQVARFEAFREKVLRSHFCMRAKLCERELDTNTIRTIDRAHFKLVNNLTFTKPHVECINLKTPEDIKNEPNADTDDTKDNIVENPDLKQEDEKNDDTELDNDAVEDIFILTDVEDIKKRRRRVNAKKKMKLEKFDDDDDVKLVNFAKKRPNRKKESVQKKNVVKKRELKSKNADDNPKPKVKKERKLKEDSKRKFRNPENGYMPVFDFATFENAFEVRVVTLSKEDQLEEIATRKESANYLESPFQCHDCGKGFLAEEAYNNHQLRHSPSAGPYACEVCKVRFNMQCRRQEHQDMHRLKFFCKNCSFVSRNRHQARRHYDMHAGKTFECKHCGKMFNKSSTYLSHVRLAHPDMHVSCDLCGETFVGQAGLKQHKAKMHSIAENIKPQKFECGTCSATFLSVEALNRHTDTAGEHRDLRPCEQCGENCASEHKLQEHVTETHPKETYRCEECNMSFKRASAYELHHRRKHLGQRFSAAGRHVPRRTPGHFVCEQCGRVLTRFSAAGRHVPRRTPGHFVCEQCGRVLTVSVCNTGTCLHTTCTPAQAPRAAVQRRRPPRAAPHARTLRVRAVRPRAHGECVQHRHVPTHDLHTGASTSGSGSAPPAATCRAARPDTSCASSAAACSRAAGRHVPRRTPGHFVCEQCGRVLTVSVCNTGTCLHTTCTPAQAPRAAVQRRRPPRAAPHARTLRVRAVRPRAHGECVQHRHVPTHDLHHRRKHLGQRFSAAGRHVLRRTPGHFVCEQCGRVLTVSVCNTGTCLHTTCTTGASTSGSGSAPPAATCRAARPDTSCASSAAACSRAAGRHVPRRTPGHFVCEQCGRVLTVSVCNTGTCLHTTCTTGASTSGSGSAPPAATCRAARPDTSCASSAAACSRAAGRHVPRRTPGHFVCEQCGRVLTVSVCNTGTCLHTTCTTGASTSGSGSAPPAATCRAARPDTSCASSAAACSRAAGRHVPRRTPGHFVCEQCGRVLTVSVCNTGTCLHTTCTTGASTSGSGSAPPAATCRAARPDTSCASSAAACSRAAGRHVPRRTPGHFVCEQCGRVLTRFSAAGRHVPRRTPGHFVCEQCGRVLTSRQGLRYHLRDHKGLNLKLFTCPECNKTFAAKHMRDWHMRSHTGEKPYQCPECPLAFSLNSNFKRHHKAVHLGQRKSIPCNICGRVFTTTSCVRVHVNAVHRGMPWPKRNRARAKPDPKSPLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -