Basic Information

Insect: Cydia amplana
Gene Symbol: -
Assembly: GCA_948474715.1
Location: OX419680.1:1534133-1556393[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0018 0.097 13.6 1.6 1 23 122 144 122 144 0.99

2 14 0.01 0.55 11.3 3.4 1 23 151 173 151 173 0.98

3 14 1.1 58 4.9 0.8 2 23 178 199 177 199 0.93

4 14 0.0071 0.38 11.8 3.3 1 23 204 227 204 227 0.92

5 14 0.015 0.83 10.7 0.0 3 23 234 255 233 255 0.93

6 14 0.0094 0.51 11.4 0.1 2 21 260 279 259 284 0.91

7 14 0.017 0.92 10.6 0.2 3 22 290 309 289 311 0.88

8 14 0.16 8.5 7.5 0.1 2 23 317 339 316 339 0.95

9 14 0.14 7.6 7.7 1.3 2 23 372 393 371 394 0.93

10 14 5.4e-08 2.9e-06 27.9 0.4 1 23 400 422 400 422 0.99

11 14 0.00024 0.013 16.4 0.8 1 21 428 448 428 449 0.95

12 14 2.9 1.6e+02 3.5 0.1 6 21 508 523 505 524 0.87

13 14 0.0089 0.48 11.4 3.3 1 23 594 617 594 617 0.95

14 14 0.00069 0.037 14.9 0.7 1 23 624 647 624 647 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0018	0.097	13.6	1.6	1	23	122	144	122	144	0.99
2	14	0.01	0.55	11.3	3.4	1	23	151	173	151	173	0.98
3	14	1.1	58	4.9	0.8	2	23	178	199	177	199	0.93
4	14	0.0071	0.38	11.8	3.3	1	23	204	227	204	227	0.92
5	14	0.015	0.83	10.7	0.0	3	23	234	255	233	255	0.93
6	14	0.0094	0.51	11.4	0.1	2	21	260	279	259	284	0.91
7	14	0.017	0.92	10.6	0.2	3	22	290	309	289	311	0.88
8	14	0.16	8.5	7.5	0.1	2	23	317	339	316	339	0.95
9	14	0.14	7.6	7.7	1.3	2	23	372	393	371	394	0.93
10	14	5.4e-08	2.9e-06	27.9	0.4	1	23	400	422	400	422	0.99
11	14	0.00024	0.013	16.4	0.8	1	21	428	448	428	449	0.95
12	14	2.9	1.6e+02	3.5	0.1	6	21	508	523	505	524	0.87
13	14	0.0089	0.48	11.4	3.3	1	23	594	617	594	617	0.95
14	14	0.00069	0.037	14.9	0.7	1	23	624	647	624	647	0.95

Sequence Information

Coding Sequence: ATGTTTAAGCTCGATGGATCGGATAACTATTACATCGTCTTGCCCATGGTACAGAATACGTGTTCCGGCCAGGATTTGTTGTGCTGCCGCGCCTGTTTAACCACCGACGGCAAATTGCACAATATCCATGAGTGTAGACTTGCTGACGCTTTCTCTGCCATCGCTGGGACTCCTATGATCAAAGACCAGCTCCCTCAATACCTGTGCTCACACTGCCGCACCCTGCTGATCAAGTGTGCCTCGTTCAGGAATATGTGTCTCCAAACACAACAACAGCTCCTGCTAGGGTTGCAGACGGGACAGGAGGAGCAGTTAGCAGAATTGGCAGCGCGTCAGAAAACCAACAACTACCTAAAGACGGACTACAAGTGTGAGGAGTGTTACAAAGGATTCTGGTTCAAGAACGCTTATGAGAACCACATGCGGCGGCATAGTGCTAGCAGCGGTCCGTACGAGTGCGAGGTCTGCCACATTCGCTTCGCGAGTAACTGCAAGCGAACGGCGCACCAGGAAACGCATCGGACCAAGATGGTATGCACGCTCTGCGACTTCGTGTCTAGGAAAAGGTCGCAGGCGATGCTGCACCACGGCGTGCACACGGGCCGCGTCTACGAGTGCCAGCACTGTGGCAAGAGCTTCATAAAGAGAACGAGCCACTTGTCGCACGTGCGTCTCGCTCACCCCGGGCTGAACGTGGCGTGCGACGAGTGCGGCGAGGTGTTCGTCAGCCGCCAGGGCCTCGGGCTGCACAAGGCGAAAATACATGACAAGAAAATCAAGTGCAAAATCTGCTCAGCCAAGTTCGTGAGTTCAGCCGCTCTGGACAGACATACGGACACGGCCGGCGAGCATAAAGACCTGCGGCCGTGCGAGCAGTGCGGCGAGAACTGTGCGAGCGAGGACGCGCTACAAAAGCATGCGGAAGACACACATTCGAAGGAGTCAATTCGATGTGAATTGTGCTTGATATCGTTTCCGACCGCGCAAGCGTACTCGACCCACGTGTCCCGCTCGCACCTACAGCAGAGGATGGCGACAAAGCATCCGCGACAATACCGCGAGTGGGCCAAACGGAAGACCCGCGAGAACCCCGGCGTGAAGAAGAGAGAAATTATGTGCGAGCAGTGCGGAGACAAATTCCTGTTCCCATCACTGCTGAAGTTACATCAACAGAAACACCATCAGGCTCTGAAGCCGTATGTCTGCAATGAATGCTCGAAGGCATTCTCATCGAAGTCAAGTCTAGAGGTCCACATCCGCTCGCACACAGGCGAGAAACCTTACAAGTGTCTGCGCTGCCCTCTTGCCTTCACTATGAGGAGTAACCTCAAACGACACCATAACGCGGTGAGTACCATCGTTAACACAAGTCTCCCCTGCACGGATCGTGCTTGCAGAACGGGCAAGAAACCTTACAACTGTAAGCACTGCGCGCTCGCCTGCAGCATGTGGATTGTGGGGCCGTGCGGACGCAAACGCCAATTTGGCTCGGGCGAGGGCAAGGGCGAGAAACCTTACAACTGCGCTCTCGCCTGCAGCATGTGGGGTAACCTCAAACGACACCACAACGCGGTGAGTACCATCGTCAACACTAAGTCTCCCCTAAGATCAAGTCTCCCCTGCACGGATCGGGCTTGCACACGGGCGAGAAACCTTACAACTGTAAGCACTGCGCGCTCGCCTGCAGCATGTGGGGTAACCTCAAACGACACCACAACGCGGATCAAGTTTCCCCAGTCTCCCCTCCACAGATCGGGCTTGCACACGGGCGAGAAACCTTACAACTGTAAGCACTGCGTGCTCGCCTGCAGCATGTGGGGTAACCTCAACCGACACCATAACGCGGTGCACCTTGGCGTCCGCGGTTGCTACGCGTGCAGCATCTGTGGGAGCACAGTCAGTACCAAGCATTCGCTACGCGTACACGTCGAGTCCAAACATGGCGGCCGAGGCTGGCCCCGGAGTCGCAAGCGGCAACAGGCACAGAAATCAAAAGATAAATAA
Protein Sequence: MFKLDGSDNYYIVLPMVQNTCSGQDLLCCRACLTTDGKLHNIHECRLADAFSAIAGTPMIKDQLPQYLCSHCRTLLIKCASFRNMCLQTQQQLLLGLQTGQEEQLAELAARQKTNNYLKTDYKCEECYKGFWFKNAYENHMRRHSASSGPYECEVCHIRFASNCKRTAHQETHRTKMVCTLCDFVSRKRSQAMLHHGVHTGRVYECQHCGKSFIKRTSHLSHVRLAHPGLNVACDECGEVFVSRQGLGLHKAKIHDKKIKCKICSAKFVSSAALDRHTDTAGEHKDLRPCEQCGENCASEDALQKHAEDTHSKESIRCELCLISFPTAQAYSTHVSRSHLQQRMATKHPRQYREWAKRKTRENPGVKKREIMCEQCGDKFLFPSLLKLHQQKHHQALKPYVCNECSKAFSSKSSLEVHIRSHTGEKPYKCLRCPLAFTMRSNLKRHHNAVSTIVNTSLPCTDRACRTGKKPYNCKHCALACSMWIVGPCGRKRQFGSGEGKGEKPYNCALACSMWGNLKRHHNAVSTIVNTKSPLRSSLPCTDRACTRARNLTTVSTARSPAACGVTSNDTTTRIKFPQSPLHRSGLHTGEKPYNCKHCVLACSMWGNLNRHHNAVHLGVRGCYACSICGSTVSTKHSLRVHVESKHGGRGWPRSRKRQQAQKSKDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -