Camp000421.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419680.1:320535-347431[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.077 4.2 8.5 2.9 1 19 448 466 448 471 0.91 2 22 2.1 1.1e+02 4.0 1.9 1 23 478 500 478 500 0.96 3 22 4.1 2.2e+02 3.1 0.2 1 13 504 516 504 520 0.82 4 22 2.4 1.3e+02 3.8 1.0 2 23 623 644 623 644 0.96 5 22 4.1 2.2e+02 3.1 0.2 1 13 648 660 648 664 0.82 6 22 2.4 1.3e+02 3.8 1.0 2 23 754 775 754 775 0.96 7 22 0.16 8.6 7.5 3.3 1 23 779 801 779 801 0.96 8 22 0.00063 0.034 15.1 0.7 1 23 806 829 806 829 0.97 9 22 3.1 1.7e+02 3.5 0.1 2 23 835 857 834 857 0.77 10 22 2.1 1.1e+02 4.0 0.1 2 23 903 925 902 925 0.77 11 22 2.1 1.1e+02 4.0 0.1 2 23 937 959 936 959 0.77 12 22 2.1 1.1e+02 4.0 0.1 2 23 971 993 970 993 0.77 13 22 2.1 1.2e+02 4.0 0.1 2 23 1005 1027 1004 1027 0.77 14 22 2.8 1.5e+02 3.6 0.0 3 20 1038 1055 1037 1057 0.89 15 22 0.037 2 9.5 0.0 3 23 1068 1089 1067 1089 0.95 16 22 0.058 3.1 8.9 0.2 2 23 1095 1117 1094 1117 0.94 17 22 0.00043 0.023 15.6 2.2 1 23 1140 1162 1140 1162 0.98 18 22 0.0015 0.08 13.9 0.7 1 19 1168 1186 1168 1189 0.93 19 22 3.2e-05 0.0017 19.2 2.6 1 23 1206 1228 1206 1228 0.96 20 22 0.0028 0.15 13.0 1.5 3 23 1236 1256 1234 1256 0.96 21 22 3.4e-06 0.00019 22.2 1.6 1 23 1262 1284 1262 1284 0.97 22 22 9.6e-05 0.0052 17.6 0.4 1 23 1290 1313 1290 1313 0.95
Sequence Information
- Coding Sequence
- ATGTTGAAAAGCTTGAAGCAGGAAAGTGCGGAGGAGCTGCTAGCTTGCCGCATATGTCTCGCGACGGACACTCATTTGTATGGGATTTTGGAGCACCGATTGGAAAATGCTTTCATTGATATTACAGGCACTACCCTGTCGGCATGGGACGGCTACCCGCAGCACATCTGCGTGGCGTGCCGCGCGCTGCTGCGCCGCGCGAGCGACCTGCGCGCCCGCTCCCGCCGCGCGCAGCGGGCACTCAAGAGGATCCTCATGCTACAACatactATAACGACAGACTACATTCGTACAGTGGACCGTATAGCTGAGGGCCTAAGTCTGCCTCTCTCCATCTCTGTCTGTCCTGAGCCTGTACTCTTCCAACATGATGACAACGACGATCTTATAAAAGAGGAGATCCCCCTTCTCTCCCCCTCCCCGCTCCCGTCCCTCCCCTCCCTCCCCTCCCCCAAAGACATCATAGTGAAGGACGAGCTGGCTTGCGAGTACGAGTCCAACGACGACGTCGCTCTCAGCGAGCTGCAGGAGAGACCCGGGGAGCACAAGGGGAAGAGGAAAAAGGTTATGAGGAAGTCGAAGGTTAGTCGTCTCTCTCTGGTCGTCTATATGAAGGACGAGCTGGCTTGCGAGTACGAGTCCAACGACGACGTCGCTCTCAGCGAGCTGCAGGAGAGACCCGGGGAGCACAAGGGGAAGAGGAAAAAGGTTATGAGGAAGTCGAAGGTTAGTCGTCTCTCTCTGGTCGTCTACATGAAGGACGAGCTGGCTTGCGAGTACGAGTCCAACGACGACGTCGCTCTCAGCGAGCTGCAGGAGAGACCCGGGGAGCACAAGGGGAAGAGGAAAAAGGTTATGAGGAAATCGAAGGTGAGTCGTCTCTCTCTGGTCGTCTATATGAAGGACGAGCTGGCTTGCGAGTACGAGTCCAACGACGACGTCGCTCTCAGCGAGCTGCAGGAGAGACCCGGGGAGCACAAGGGGAAGAGGAAAAAGGTTATGAGGAAATCGAAGGTGAGTCGTCTCTCTCTGGTCGTCTATATGAAGGACGAGCTGGCTTGCGAGTACGAGTCCAACGATGACGTCGCTCTCAGCGAGCTGCAGGAGAGACCCGGGGAGCACAAGGGGAAGAGGAAAAAGGTTATGAGGAAATCGAAGACGAAAAAAACAAAGTCTGAGAAAGTGAAGAGCAGAGAACGGAAAAAGACTGAGAAGATTCGGGATGAAGACTTCCCCGCGTTCGAGAAGGAATACAACTTCGATGTCGTCATACTGTCCAGGGAACAACAGATTGAAGACATGGCGTCGCGGAAAGAGAAGGACAACTACATGAACTCTCAGTTCAAATGCGAGAAATGTTTCAAGGGGTTCTACACCGAGGCGACACTCGCCAACCACGACTCCAAACATCACGACGAGACTGTGGGTCCGCACTCGTGCGAGCTCTGCCTGTGCCGGTTCCGTATCCCCGCCATCCTGCGGCGCCACCTCGCCACGCACCGGCTACGGTTCGTGTGCCAGCACTGCGGCTTCACCGCCAGGGACAGTGTGTCGGTCCGTGGGCCCGGTGCGAGCTCTGCCTGTGCCGGTTCCGTATCCCCGCCATCCTGCGGCGCCACCTCGCCACGCACCGGCTACGGTTCGTGTGCCAGCACTGCGGCTTCACCGCCAGGGACAGGTATTGTTACTAACATTACCGTGTATATAGTATTACTAGTGTGTCGGTCCGTGGGCCCGGTGCGAGCTCTGCCTGTGCCGGTTCCGTATCCCCGCCATCCTGCGGCGCCACCTCGCCACGCACCGGCTACGGTTCGTGTGCCAGCACTGCGGCTTCACCGCCAGGGACAGTGTGTCGGTCCGTGGGCCCGGTGCGAGCTCTGCCTGTGCCGGTTCCGTATCCCCGCCATCCTGCGGCGCCACCTCGCCACGCACCGGCTACGGTTCGTGTGCCAGCACTGCGGCTTCACCGCCAGGGACAGTGTGTCGGTCCGTGGGCCCGGTGCGAGCTCTGCCTGTGCCGGTTCCGTATCCCCGCCATCCTGCGGCGCCACCTCGCCACGCACCGGCTACGGTTCGTGTGCCAGCACTGCGGCTTCACCGCCAGGGACAGGTATTGTTACTAACATTACCGTGTATATAGTATTACTAGTGTGTCGGTCCGTGGGCCCGGTGCGAGCTCTGCCTGTGCCGGTTCCGTATCCCCGCCATCCTGCGGCGCCACCTCGCCACGCACCGGCTACGTGTGTCGGTCCGTGGGCCCGGTGCGAGCTCTGCCTGTGCCGGTTCCGTATCCCCGCCATCCTGCGGCGCCACCTCGCCACGCACCGGCTACGGTTCGTGTGCCAGCACTGCGGCTTCACCGCCAGGGACAGGTCGCACGCCATGACGCACTCTAAGGAGCACAGGGGGCTGCGCTACGAGTGCCCGTACTGCGGAGACACCTTCAAAAAGCGGTCAACGTACGGCACGCACGTCCGCATCCAGCACCCCAACCAGAACAAGTCGTGCGACGTTTGCGGAGAAACGTTCCTCGGAGCACTCGGGCTCGCGCTACACAAGAAGAAGTCACACCGACAGGTAACTCCCTCGTCGACGGTAACTCCTTCATGTGACGTGCGCGGAGAAACGTTCCTCGGAGCACTCGGGCTCGCGCTACACAAGAAGAAATCACACCGACAGGTAACTCCCTCGTCGACAGGTAACTCCACATGTGACGTGTGCGGAGAAACGTTCCTCGGAGCACTCGGGCTCGCGCTACACAAGAAGAAGTCACACCGACAGGTAACTCCCTCGTCGACAGGTAATTCCACATGTGACGTGTGCGGAGAAACGTTCCTCGGAGCACTCGGGCTCGCGCTACACAAGAAGAAGTCACACCGACAGGTAACTCCCTCGTCGACAGGTAACTCCACATGTGACGTGTGCGGAGAAACGTTCCTCGGAGCACTCGGGCTCGCGCTACACAAGAAGAAGTCACACCGACAGGTAACTCCCTCGTCGACAGGTAACTCCACATGTGACGTGTGCGGACAAACGTTCCTCGGAGCACTCGGGCTCGCGCTACACAAGAAGAAGTCACACCGACAGGTGGTGGAGGAAGGCGCGGCGCCCTGCGCTCAGTGCGGCGTGAGCTTCCAGAGCGAGTACGCGCGCGCCAGGCACACCGCGCTCGCCGCGCGCCCCTGCCAGCTCACCAGGGCATGCGCGCTGTGCGGAGAAAACTTTAAAGATGATCCCGCGCTGCAGGAACATGTTAGAGAGAGACACCAAGATCGGCAGACGCAGTGCCAGGAGTGTGACATGACGTTCGCGAGCGAGGCATCCCGCAGCGTGCACTACGAGCGAGTCCATCTCAAGGTGAAAGTGCGCCGCTGCCTGCCGAAGACTGGGCGCAAGTACGACCGCTACGGGGACCACTTCATGTGTGAGATGTGTGGCAAGAAGTGCCAGAACAACATCGCCCTGAAGTACCACATCCGCTCACACACGGGGGAGAAACCCCACGCCTGCCCCCATTGCCCGAAGCACTACTCCACGCCCGTCGCGCTGCAGGTACACTTCACTTTGTACATCGCCCTGAAGTGCCACATCCGCTCACACACGGGGGAGATGCCGCACGCCTGCCCCCACTGTCCGAAGCACTACTCCACGCCCGTCGCGCTGCAGTACCACATCCGGTCGCACACGGGGGACAAGCCGCTGGCGTGCCCGCACTGTCCGCTGCGTTACGCCACACACAAGGGACTGCAGACTCACCTACTCAAACACACGGGCGAGCGGCCGTTCAAGTGTGAGCTGTGTGGGAAGGCCTTTACACAGAAGACCATGCTGCAGAAACACAAAACGGTACACACAGGTGAGAAACCATACGCGTGCGATATATGCGGCAAAGCGTTCACGCAGTCCGGCTCCGTGCACACGCACGTCAAGTACGTGCACAAGAAGCTGCCCGCGCCGCCGCGCAACCGCGGCAAGCGCGACAAGCCCGACTGA
- Protein Sequence
- MLKSLKQESAEELLACRICLATDTHLYGILEHRLENAFIDITGTTLSAWDGYPQHICVACRALLRRASDLRARSRRAQRALKRILMLQHTITTDYIRTVDRIAEGLSLPLSISVCPEPVLFQHDDNDDLIKEEIPLLSPSPLPSLPSLPSPKDIIVKDELACEYESNDDVALSELQERPGEHKGKRKKVMRKSKVSRLSLVVYMKDELACEYESNDDVALSELQERPGEHKGKRKKVMRKSKVSRLSLVVYMKDELACEYESNDDVALSELQERPGEHKGKRKKVMRKSKVSRLSLVVYMKDELACEYESNDDVALSELQERPGEHKGKRKKVMRKSKVSRLSLVVYMKDELACEYESNDDVALSELQERPGEHKGKRKKVMRKSKTKKTKSEKVKSRERKKTEKIRDEDFPAFEKEYNFDVVILSREQQIEDMASRKEKDNYMNSQFKCEKCFKGFYTEATLANHDSKHHDETVGPHSCELCLCRFRIPAILRRHLATHRLRFVCQHCGFTARDSVSVRGPGASSACAGSVSPPSCGATSPRTGYGSCASTAASPPGTGIVTNITVYIVLLVCRSVGPVRALPVPVPYPRHPAAPPRHAPATVRVPALRLHRQGQCVGPWARCELCLCRFRIPAILRRHLATHRLRFVCQHCGFTARDSVSVRGPGASSACAGSVSPPSCGATSPRTGYGSCASTAASPPGTGIVTNITVYIVLLVCRSVGPVRALPVPVPYPRHPAAPPRHAPATCVGPWARCELCLCRFRIPAILRRHLATHRLRFVCQHCGFTARDRSHAMTHSKEHRGLRYECPYCGDTFKKRSTYGTHVRIQHPNQNKSCDVCGETFLGALGLALHKKKSHRQVTPSSTVTPSCDVRGETFLGALGLALHKKKSHRQVTPSSTGNSTCDVCGETFLGALGLALHKKKSHRQVTPSSTGNSTCDVCGETFLGALGLALHKKKSHRQVTPSSTGNSTCDVCGETFLGALGLALHKKKSHRQVTPSSTGNSTCDVCGQTFLGALGLALHKKKSHRQVVEEGAAPCAQCGVSFQSEYARARHTALAARPCQLTRACALCGENFKDDPALQEHVRERHQDRQTQCQECDMTFASEASRSVHYERVHLKVKVRRCLPKTGRKYDRYGDHFMCEMCGKKCQNNIALKYHIRSHTGEKPHACPHCPKHYSTPVALQVHFTLYIALKCHIRSHTGEMPHACPHCPKHYSTPVALQYHIRSHTGDKPLACPHCPLRYATHKGLQTHLLKHTGERPFKCELCGKAFTQKTMLQKHKTVHTGEKPYACDICGKAFTQSGSVHTHVKYVHKKLPAPPRNRGKRDKPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -