Basic Information

Insect: Cydia amplana
Gene Symbol: -
Assembly: GCA_948474715.1
Location: OX419681.1:1048499-1060559[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00062 0.033 15.1 3.1 1 23 453 475 453 475 0.98

2 9 2.6e-06 0.00014 22.6 3.1 1 23 521 544 521 544 0.96

3 9 0.1 5.6 8.1 0.0 2 23 550 571 550 571 0.94

4 9 2.4e-05 0.0013 19.5 2.5 1 23 579 601 579 601 0.96

5 9 0.0094 0.51 11.4 4.7 1 21 606 626 606 628 0.94

6 9 1.4e-06 7.6e-05 23.4 1.4 1 23 637 659 637 659 0.99

7 9 9.6e-07 5.2e-05 23.9 1.1 1 23 665 688 665 688 0.97

8 9 0.0021 0.11 13.4 2.0 1 23 694 717 694 717 0.96

9 9 0.0037 0.2 12.6 1.5 1 23 725 748 725 748 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00062	0.033	15.1	3.1	1	23	453	475	453	475	0.98
2	9	2.6e-06	0.00014	22.6	3.1	1	23	521	544	521	544	0.96
3	9	0.1	5.6	8.1	0.0	2	23	550	571	550	571	0.94
4	9	2.4e-05	0.0013	19.5	2.5	1	23	579	601	579	601	0.96
5	9	0.0094	0.51	11.4	4.7	1	21	606	626	606	628	0.94
6	9	1.4e-06	7.6e-05	23.4	1.4	1	23	637	659	637	659	0.99
7	9	9.6e-07	5.2e-05	23.9	1.1	1	23	665	688	665	688	0.97
8	9	0.0021	0.11	13.4	2.0	1	23	694	717	694	717	0.96
9	9	0.0037	0.2	12.6	1.5	1	23	725	748	725	748	0.95

Sequence Information

Coding Sequence: ATGTTACACAACAGTGGGCCTTACGGGCCGAACGATGTACCTATAAATATGGGAATGCCTGTGAATATGGCTCAAATGTCAAATCCAATGAATTTAGGGCAAAACTTGAGTAACTTGCCCAAAATGCCTCAACAAGCACCTGAAACTGCAGCCCCTGTTTACGATATACCGGATTATCGATCATTCGGTCACCCGCCGTTCAATATGGGGCATCCCATGAGCCCTTTTCCAAATTATCATCACCTGAACTTTGAAACAAACTATGTCCATCCAAATCCTAATTTGCCACATAATACGACGCCAAGCAGTCTTGAAAACAACATTCTGCCCATGAATTTGAATACACACAGCGAACACGGGCCTAGTTTGATGAATTACCACAATTCGGAAAGCAAAAAGTTCGATGTAAACAACTTGCATTACATTGAGAGTCTCAGTCGGAAGGTACCAATAAATATACCTCAATCACATACTAAAGCGTACCAAAAACATCAAGGACTGGAGACAAATCATGCTCAGTATAATACAGTACAAGAAAATCCATTCTACAATTCAATAAAAGTACCAGAAAAATCTTTGATTGACGCTAATAGAAGAAAAAGCTTAGAGAATACTGTGAAACTTATTGAAGATATACTTATAAATAGTACACCTAAAGATAAGTTAAAAAATGTGAATACTGAATCTATTTTAAATAACACATTAAACAAATCTAGTTTGGATATGAGAAACACGAAATTACATAGAATAGACGAAGAGTTACAAAGCACAAATGTTAATTTAAGTCATAATATAAGCACACATGACTCTAATTCCAATACCGATTTGCTAAGAAAAATATTGGAAATTAAAGATACAAAATCTGAAATCCATGGTTTAAATTTGACCAGTAATAACTCCCCAACCAAATCTATTGATTTAAATACAAAACTACAAAATCTGGAACAAGATCATACTAAAACAAAGAAAACGGTCATTAATGAATTGCCCGATGATTTTAGTAAAACTGACAATGAAATAACTAAAATACAGAGCGAAATTCAATGCAAACCTTTAAGACGGAGTCTTATAAATAATAACCAGACGGAAAAAGAGGAAAGACAGAGAGAGGATGGGTCTGTTTCAGAGAAAGAAGACTTAATAGCAGAAGTTGACATTAAGAATGAGATTATTGAAGATGTTGTCCACGTAAAGATGGAGCTGGTGGAATGCAACAAAAGCCAGAGTCGACCATTCCTAAAAGACAGTAACGCTATACCGAGAGATGTTATAGACGCTGATGCAGTTATAATTGATGAGAATAATGTGGCAGTAGCTAAGGAGGCTGCGAAAAAGGGCTCAAATCCAAAGACCTACTTCGAATGCTCACACTGTGGGGTCGTCTTTAGACACCCGAAGCGGTTCCTGGTCCACACGAGATGGCACACGTTCGGATTGACCAGCGAGACGAGACACAGAATGGAGAAAGAGAGAGAGCTCAAGAAGAGTATGAAGAGAGAAGCTAGGATCGTTGAAAGattgaacgccaaagaagtGAAAGATGGCGCCGAGGGCGAAGCGCACCCGTGTAAGGACTGCGACAAGGTGTTTTCAGTTAAAAGCAGCCTCAAAAACCACCGGCAGAAATATCACCCGACTAGAGTGCGCGAGTGCAAAATATGCAAGGCGTCGGTGACGGGGTGGATGGCGCTGCGCGCGCACGTGGCGGCGCACGCGGCCGGGGCGGCGCCGGGGCACGCGTGCCCCGAGTGCCCCAAGCGGTTCAAGTACGCGCACTCGCTCGCCAAACACAGGGACACACATCTGGAAAAAACACATAGCTGCGAGCAATGCTCGAAGAAATTCGGGTCGCAGGCGCTACTGAAGATGCATATGAAGTGCCATGAGCGGGCCGCCAGGGGCGCCACCTACAGGTGCACTTACTGCGGAAAAGGCTTTTTCGAGAGCTACAACTTGCAGGTGCACGAAAGAACACATCGCAACGAACGCCCCTTCACCTGCGATATCTGCAAGACCAGCTTCGGAACCAATTCTAGTCTCAAGCGGCACATTAAAGTGTCTCACAGTACCTCAAAACCCTACACCTGCGAAACATGCCACCGGAGCTTCGCGTCTAGCACAACTCGCGCGCGGCACACGGCCCGCGCGCACGGCGACGCCTCCGCCTTCCCCCACAAGTGCACGCTCTGCCCGAGGCAGTATAGTGCCCTAAAGGAGCTGCAGAGACATATAGGGAAGACGCATAAGGAAGAAAGAGATAGGGGAGAAATAGGGTAA
Protein Sequence: MLHNSGPYGPNDVPINMGMPVNMAQMSNPMNLGQNLSNLPKMPQQAPETAAPVYDIPDYRSFGHPPFNMGHPMSPFPNYHHLNFETNYVHPNPNLPHNTTPSSLENNILPMNLNTHSEHGPSLMNYHNSESKKFDVNNLHYIESLSRKVPINIPQSHTKAYQKHQGLETNHAQYNTVQENPFYNSIKVPEKSLIDANRRKSLENTVKLIEDILINSTPKDKLKNVNTESILNNTLNKSSLDMRNTKLHRIDEELQSTNVNLSHNISTHDSNSNTDLLRKILEIKDTKSEIHGLNLTSNNSPTKSIDLNTKLQNLEQDHTKTKKTVINELPDDFSKTDNEITKIQSEIQCKPLRRSLINNNQTEKEERQREDGSVSEKEDLIAEVDIKNEIIEDVVHVKMELVECNKSQSRPFLKDSNAIPRDVIDADAVIIDENNVAVAKEAAKKGSNPKTYFECSHCGVVFRHPKRFLVHTRWHTFGLTSETRHRMEKERELKKSMKREARIVERLNAKEVKDGAEGEAHPCKDCDKVFSVKSSLKNHRQKYHPTRVRECKICKASVTGWMALRAHVAAHAAGAAPGHACPECPKRFKYAHSLAKHRDTHLEKTHSCEQCSKKFGSQALLKMHMKCHERAARGATYRCTYCGKGFFESYNLQVHERTHRNERPFTCDICKTSFGTNSSLKRHIKVSHSTSKPYTCETCHRSFASSTTRARHTARAHGDASAFPHKCTLCPRQYSALKELQRHIGKTHKEERDRGEIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00411787;
90% Identity: -
80% Identity: -