Camp000470.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419680.1:857114-874698[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00015 0.008 17.0 0.3 1 23 388 410 388 410 0.97 2 11 0.012 0.64 11.1 3.5 1 23 442 464 442 464 0.98 3 11 0.05 2.7 9.1 2.4 1 23 469 492 469 492 0.96 4 11 0.0009 0.049 14.6 0.2 3 23 499 520 498 520 0.96 5 11 0.005 0.27 12.2 0.2 1 20 526 545 526 547 0.94 6 11 0.063 3.4 8.8 0.5 3 23 559 580 558 580 0.91 7 11 0.027 1.5 9.9 3.1 2 23 586 608 585 608 0.94 8 11 0.0084 0.45 11.5 0.6 3 23 635 655 634 655 0.97 9 11 3e-07 1.6e-05 25.5 0.7 1 23 661 683 661 683 0.98 10 11 2e-05 0.0011 19.8 0.1 1 23 689 712 689 712 0.97 11 11 0.00028 0.015 16.2 0.1 1 23 719 742 719 742 0.96
Sequence Information
- Coding Sequence
- ATGCCGGGACAAAGCGAGGAAGATGATTATCATACAGAACGGACACGCACTGCCTCGCCCCGACTCGGATTACCTCGCCCCGCGACTGGCCGCGACATGAATGTGTGCGTCCATGATTCGACCATGAATAGAACACTGATAAATTCGCTGCAGGACGAGTTGCTATGCTGCCGTGTTTGTTTAATGATGGACTGTAGACTGTACAATATTCATGAATATAAACTCGCCGATACCTTTACTCGCATCTCTGGGACTACTGTGTCCCGGGATGGGCTGCCGCAGTACCTGTGCGCATACTGCCTCACGCTGCTCCACAAATGCTCATCCTTCAGAGACATGTGTCTCCGCACGCTGGAGCTACTCACGCCCGCGCTGCTCAAGGGGGCGCTGGACACAGATTATGTTCGCAAATATCAAAACCCTCACCGGTCCCTCAACTTAACTCGAACTGAACTCCAAATTGTAGATTTAAACCCATCAGAAGATTTATTTCATAAACTTATACTGAACAAACACGTAAAAGAAGAAATTATTCCGCTAGACACCATCAATGAAGCTACTCCTGAAGCACTGGATATCAAAGAAGATTCAATTGAAATCACTGATGATGATTCTAAACAACTCGTTTTCAAAGATGAAATAATCAGTAAGATAAAAACGGAGAAGTCAATTTTAAAAAATGTCTTGTTATCCAAAAAAGTCTTAAACAGCAAAAAAAATATTAAGACTCCAAAAAAGACCAAAAGAGTCTTGAAAACTGTAAAAAAGTTAAACAGCAAACAGACTAAAACTAAAGTTAAACAAAATTTAAAAACGGGACATGTCAATGAAGGTATGGATATTGATAAAAATATAATGGAAACGGGGAAACAAAACGAAATATTGAAAATGATGACGATTGAAGCGAAGGATAATAAAATTGAATTTAATGTAACTGAAGAATCTGATGATGGCGATGGTAATAATGATCTTACCTATGAAATTGAAGAAGTGCCTGTAGAATTTAAGGAAAGAAGAAGGAGGAAAAAGCGATCGCAGCCTGACACTAGTTTAGCCAAATTTGGGAGTAGTATTAACCATAAATTTGTTTCTTTAAACAAGGAAGAGCAACTGGAAGAAATCGCATCGCGTAAGAAGTCCCAGATCTACTTGGAGGCGCTGTTCAAGTGTGAGGACTGCGGGAAAGGGTACAGCGATGAGCCCGCCTACAAGACCCACCGAGTCCGGCATAGCCCGAGCATGGGTCCGCGCTCCTGCGATATCTGCGCTGTGCGTGTGCACCCGCGTGGCCTCTATATACACCAGGCCCGGCATCGAATGAAGTTCACTTGCAATGAGTGCAACTTCGTCTCCAGGGATAAGACCCAAGCGAGAAAGCATCACGAAACACACGCGGGCAAGACCTACAACTGCCCGCACTGCGAGAAGTGGTTCATAAAGAGCACGACGTACTTCTCGCACGTGCGTCTGATGCACCCCGAGCTGAACGTGGACTGTGTCGACTGCGGAGAAACTTTTGTCAGCGACTACGGGCTCAGGCAACACAGGAACAGGACACATGCGAAATCGCATCAATTTGTATGCAGTATCTGCTCAGCCAAGTTTAACAGCGAACAAGCGCTGAAGAAACATACGGACTCGGCCGGTGAGCATAGAGAGAGAGAGCTGCGGCCGTGCGAGCAGTGCGGCGAGAACTGTGCGAGCGAGCACAAGCTACAGGAACATGTTGGGGTTGCACATCCTGTTGAGATGTGTCACTGTGAACGGTGTGACGTAACGTTCAGTAATGCGGCGGCATTAGACACACACAACCGCCGTAAGCACCTCGGCCAGCGGTACCAGGGCCCGACACGTAAAGACCACCGCAGCAAAGCCAGAAACAAGAAACAGCGGCCAGCCATGTGCGACCAGTGCGGTGTTACTGTGCAGAACTCGTCATTTCTCGAATATCACAAGCGCACGCATCTCGCCGTGAAGCCGTACGCCTGTCCTCATTGCCCGAAGACATTTGTGATGCAAGCCCTTCTAAAGCAACACATACGGACGCACACGGGTGAGAAGCCGTTCCAGTGCTCCGAGTGTCCGCTCGCCTTCGCACTAAAGGGCAACTTGAACCGACATTACAAAGTTGCACACCTAGGTGAACGCGAATCTTTTATGTGCCCATTGTGCGGGAGCACGGCCACCACCAAGTCTTCATTGAAGGTGCACGTGCGCGCGGTGCACGGCGACGGCGGCTGGCCCAAGCGGGACCGCAGCAAACGCGAGAAAAGACGCAGCTAG
- Protein Sequence
- MPGQSEEDDYHTERTRTASPRLGLPRPATGRDMNVCVHDSTMNRTLINSLQDELLCCRVCLMMDCRLYNIHEYKLADTFTRISGTTVSRDGLPQYLCAYCLTLLHKCSSFRDMCLRTLELLTPALLKGALDTDYVRKYQNPHRSLNLTRTELQIVDLNPSEDLFHKLILNKHVKEEIIPLDTINEATPEALDIKEDSIEITDDDSKQLVFKDEIISKIKTEKSILKNVLLSKKVLNSKKNIKTPKKTKRVLKTVKKLNSKQTKTKVKQNLKTGHVNEGMDIDKNIMETGKQNEILKMMTIEAKDNKIEFNVTEESDDGDGNNDLTYEIEEVPVEFKERRRRKKRSQPDTSLAKFGSSINHKFVSLNKEEQLEEIASRKKSQIYLEALFKCEDCGKGYSDEPAYKTHRVRHSPSMGPRSCDICAVRVHPRGLYIHQARHRMKFTCNECNFVSRDKTQARKHHETHAGKTYNCPHCEKWFIKSTTYFSHVRLMHPELNVDCVDCGETFVSDYGLRQHRNRTHAKSHQFVCSICSAKFNSEQALKKHTDSAGEHRERELRPCEQCGENCASEHKLQEHVGVAHPVEMCHCERCDVTFSNAAALDTHNRRKHLGQRYQGPTRKDHRSKARNKKQRPAMCDQCGVTVQNSSFLEYHKRTHLAVKPYACPHCPKTFVMQALLKQHIRTHTGEKPFQCSECPLAFALKGNLNRHYKVAHLGERESFMCPLCGSTATTKSSLKVHVRAVHGDGGWPKRDRSKREKRRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -