Camp000462.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419680.1:739052-751460[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00048 0.026 15.4 0.1 1 23 320 342 320 342 0.98 2 11 0.11 5.9 8.0 3.0 1 23 375 397 375 397 0.95 3 11 1.6e-05 0.00089 20.1 3.1 1 23 402 425 402 425 0.98 4 11 0.0063 0.34 11.9 0.2 3 23 432 453 431 453 0.96 5 11 0.007 0.38 11.8 0.1 2 21 462 481 461 486 0.91 6 11 0.097 5.3 8.2 0.3 3 21 492 510 491 513 0.89 7 11 0.0017 0.095 13.7 1.2 2 23 519 541 519 541 0.97 8 11 0.00013 0.0069 17.3 0.2 1 23 975 997 975 997 0.98 9 11 6.3e-05 0.0034 18.2 0.7 1 23 1003 1025 1003 1025 0.98 10 11 1.5e-06 8.4e-05 23.3 0.6 1 23 1031 1054 1031 1054 0.98 11 11 1.5e-05 0.00084 20.1 1.4 2 23 1062 1084 1061 1085 0.95
Sequence Information
- Coding Sequence
- ATGGATATAACACCAAATGAGTCGTCAAATCGTGAATCTTTAGTGCGCTGCCGCGCCTGCCTGTCCACCGAACGTAGACTGTTCAATATCCATGAATCCAAGCTTACCGACGCCTTTTCCCACATCTCGGGGACTCCTGTGTACCAGGACCATCTCCCGCAGTTCTTGTGCACATTCTGCGGCGCGTTGCTGATCAAATGCGCTTCCTTCAGAGAGATGTGCCTCCGCACACAGCAGACCCTCGTGCCGGAGCTATACAAGCAAGCGTTGAATACAGAGTATATCCACAGTATACCCTCCCATAGCATCTACAACCTAACTATAACTACATTAGAGCCTCAAGAATGCCTAGACACGGCACCCACTCTACCTGATGTAGACATAAAAGTTGAACCTAACATAGACATAGTAGACATAGACAGTATTATAAAGAACAATCTGAAAGTAGAATTAGAAAAAAAAGAAATTAATGATGACAAAGATAAAGATATAATATTTGTGAAAAACGTTGAAAGTGTTAAAAAGAAAAGGAAAAGGTGTACAGGTAAGAAGAATAATACATCAGAAGATGAATATGACCCTGAACTAAATGACAGAGATGATGACAGTATTGTCAGTTTAGAAGATAAAACGGATCTATATATAGAACTTGATGATATTAATGATGATAATGTATATAGGAAAATAAATAAATCTAAAGTGAAGAAAAAAGAAAGAAAAGGAAAGAAGGATATTGCAGTTAAAAATAATAAAAAATTGAAAGTTTTACACAAACCCAAAGAGATTACAAAGAGGACAGGGGCGAAATATCCGAGAGATCCCACAAATGACATGCCGCTGTTTGATTTTGATAAGTTTGAGAAAGCTCATGCTGTGCAAATTGTTACTTTGAGCAAGGAAGAGCAGCTGGAAGAGATCGCCTCGCGCAAGAAGTCCCGCAACTACCTGGAGTCCCGGTTCCGGTGCGACGACTGCGGGAAAGGCTTTGACGCTGAGGCCGCATACAACAACCACCTACTGCGACATAGTCCAAGCATGGGCCAGCACCCGTGTGAGATCTGTTCCGTGCGCTTCAAGCTGAAGTGCCGGCGCCAGCAGCACCAGGACCTGCACCGGCTCAAGTTCCTCTGCAAGGAGTGCAGCTTCGTCTCCAGAACCAGGAGTCAAGCAAAAAGACATCACGCCATGCACGCAGGCAAGACTTACGAGTGCCAGCACTGCGGGAAGACGTTCAAGATGAGTTCAACGTACCTGACGCACGTGCGGCGCGCGCACGCCGCGCTGAACGTGGCGTGCGACGTGTGTGGCGAGACCTTCGTAGGGGAAAAGGGGCTCAAACTTCACAAGAAGAGGACGCACTCTGAGAACATGCCACTAAGGCTCAAATGCCCTGTCTGCTCAGCTAACTTCAACAGTTTAGAAGCTCTGAACAGACACACAGACACGGCCGGCGAGCACGGAGACCTGCGGCCGTGCGAGCAGTGCGGCGAGAACTGTGCGAGCGAGGAGGCGCTACACAGGCATGTGGGGGAGGTGCATCCGTCGGAATTACGTCGGTGTGATGAGTGCGGGATGACGTTCCCCTCTGCGGCCTCGTACGACACCCACCACCGTCGCAAGCACCTGCAGCGGTACAAGGACGGGCGGAACGTCGCACGCAAACGTCGTGTCCCCCGCGCCCCGCCCCCCCGCGGGCAGTTCGTGTGCGAGCAGTGCGGACGCATACTGCCGGTGTGTACTGTCTCACTCTTACATACATCTGCAGCGGTACAAGGACGGACGGAACGTTCAGCGCAAGCGCCGCCTCCCCCGCGCCCCTCCCCCCCGCGGGCAGTTCGTGTGCGAGCAGTGCGGACGCATACTGCCGGTGTGTACTGTCTCACTCTTACATACACCTGCAGCGGTACAAGGACGGGCGGAATGTCGCACGCAAACGTCGTGTCCCCCGCGCCCCGCCCCCCCGCGGGCAGTTCGTGTGCGAGCAGTGCGGACGCATACTGCCGGTGTGTACTGTCTCACTCTTACATACACCTGCAGCGGTACAAGGACGGGCGGAATGTCGCACGCAAACGTCGTGTACCCCGCGCCCCGCCCCCCCGCGGGCAGTTCGTGTGCGAGCAGTGCGGACGCATACTGCCGGTGTGTACTGACTCACTCTTACATACACCTGCAGCGGTACAAGGACGGGCGGAATGTCGCACGCAAACGTCGTGTACCCCGCGCCCCGCCCCCCCGCGGGCAGTTCGTGTGCGAGCAGTGCGGACGCATACTGCCGGTGTGTACTGTCTCACTCTTACATACACCTGCAGCGGTACAAGGACGGGCGGAATGTCGCACGCAAACGTCGTGTACCCCGCGCCCCGCCCCCCCGCGGGCAGTTCGTGTGCGAGCAGTGCGGACGCATACTGCCGGTGTGTACTGACTCACTCTTACATACACCTGCAGCGGTACAAGGACGGGCGGAATGTCGCACGCAAACGTCGTGTACCCCGCGCCCCGCCCCCCCGCGGGCAGTTCGTGTGCGAGCAGTGCGGACGCATACTGCCGGTGTGTACTGTCTCACTCTTACATACACCTGCAGCGGTACAAGGACGGGCGGAATGTCGCACGCAAACGTCGTGTACCCCGCGCCCCGCCCCCCCGCGGGCAGTTCGTGTGCGAGCAGTGCGGACGCATACTGCCGGTGTGTACTGTCTCACTCTTACATACACCTGCAGCGGTACAAGGACGGGCGGAACGTTCAGCGCAAGCGCCGCCTCCCCCGCGCCCCGCCCCCCCGCGGGCAGTTCGTGTGCGAGCAGTGCGGACGCATACTGCCGGTGTGTACTGTCTCACTCTTACATACACCTGCAGCGGTACAAGGACGGGCGGAACGTTCAGCGCAAGCGCCGCCTCCCCCGCGCCCCGCCCCCCCGCGGGCAGTTCGTGTGCGAGCAGTGCGGACGCATACTGCCGAACGCGACGTTGCTCCGGTATCACCAGCGCACGCACCAGGACGTGAAACCGTACGCCTGCACTGAGTGCCCGAAGACATTCGCCTTGAAATCTTCTTTAAACTTCCACATGCGGTCGCACACGGGCGAGAGGCCGTTCCAGTGTCCGCTGTGCCCGCTCGCCTTTACCGTTAAGGCCAACCTCAACCGACACCACAGGACAGCGCACTTGAAGCTGCACCCCCGCATCCCGTGCTCGATCTGCGGGCGCGTGTTCACGACCAACTCGTGCGTGCGCGTGCACATCAACACCGTGCACCACGGCCAGCCCGGGCCCAAGCGGGACCGGCGCAAGCGCAAGAAACCAGACTCACCCTGTACCATCTCTAGTCTTACACAATAG
- Protein Sequence
- MDITPNESSNRESLVRCRACLSTERRLFNIHESKLTDAFSHISGTPVYQDHLPQFLCTFCGALLIKCASFREMCLRTQQTLVPELYKQALNTEYIHSIPSHSIYNLTITTLEPQECLDTAPTLPDVDIKVEPNIDIVDIDSIIKNNLKVELEKKEINDDKDKDIIFVKNVESVKKKRKRCTGKKNNTSEDEYDPELNDRDDDSIVSLEDKTDLYIELDDINDDNVYRKINKSKVKKKERKGKKDIAVKNNKKLKVLHKPKEITKRTGAKYPRDPTNDMPLFDFDKFEKAHAVQIVTLSKEEQLEEIASRKKSRNYLESRFRCDDCGKGFDAEAAYNNHLLRHSPSMGQHPCEICSVRFKLKCRRQQHQDLHRLKFLCKECSFVSRTRSQAKRHHAMHAGKTYECQHCGKTFKMSSTYLTHVRRAHAALNVACDVCGETFVGEKGLKLHKKRTHSENMPLRLKCPVCSANFNSLEALNRHTDTAGEHGDLRPCEQCGENCASEEALHRHVGEVHPSELRRCDECGMTFPSAASYDTHHRRKHLQRYKDGRNVARKRRVPRAPPPRGQFVCEQCGRILPVCTVSLLHTSAAVQGRTERSAQAPPPPRPSPPRAVRVRAVRTHTAGVYCLTLTYTCSGTRTGGMSHANVVSPAPRPPAGSSCASSADAYCRCVLSHSYIHLQRYKDGRNVARKRRVPRAPPPRGQFVCEQCGRILPVCTDSLLHTPAAVQGRAECRTQTSCTPRPAPPRAVRVRAVRTHTAGVYCLTLTYTCSGTRTGGMSHANVVYPAPRPPAGSSCASSADAYCRCVLTHSYIHLQRYKDGRNVARKRRVPRAPPPRGQFVCEQCGRILPVCTVSLLHTPAAVQGRAECRTQTSCTPRPAPPRAVRVRAVRTHTAGVYCLTLTYTCSGTRTGGTFSASAASPAPRPPAGSSCASSADAYCRCVLSHSYIHLQRYKDGRNVQRKRRLPRAPPPRGQFVCEQCGRILPNATLLRYHQRTHQDVKPYACTECPKTFALKSSLNFHMRSHTGERPFQCPLCPLAFTVKANLNRHHRTAHLKLHPRIPCSICGRVFTTNSCVRVHINTVHHGQPGPKRDRRKRKKPDSPCTISSLTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -