Basic Information

Insect: Cydia amplana
Gene Symbol: -
Assembly: GCA_948474715.1
Location: OX419679.1:1159476-1161961[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.3 69 4.7 5.5 1 23 28 50 28 50 0.98

2 17 0.00061 0.033 15.1 0.2 2 23 78 100 77 100 0.91

3 17 5.8e-05 0.0032 18.3 2.4 1 23 123 145 123 145 0.98

4 17 0.18 9.8 7.3 0.7 3 23 151 171 150 171 0.96

5 17 1.2e-06 6.3e-05 23.7 0.8 1 23 176 199 176 199 0.97

6 17 1.7 92 4.3 3.2 2 23 209 231 208 231 0.85

7 17 0.0028 0.15 13.0 1.6 1 23 237 260 237 260 0.97

8 17 0.04 2.2 9.4 0.7 1 23 311 333 311 333 0.98

9 17 4.2 2.3e+02 3.0 1.3 2 23 361 383 360 383 0.93

10 17 0.067 3.6 8.7 5.6 1 21 406 426 406 428 0.95

11 17 0.05 2.7 9.1 0.2 2 23 433 454 432 454 0.96

12 17 0.00036 0.019 15.8 1.1 1 23 459 482 459 482 0.96

13 17 0.043 2.3 9.3 1.8 2 23 492 514 491 514 0.93

14 17 0.0077 0.42 11.6 2.4 1 23 520 543 520 543 0.95

15 17 5.2e-06 0.00028 21.6 3.1 1 23 547 569 547 569 0.98

16 17 0.00013 0.0071 17.2 2.0 1 23 575 597 575 597 0.98

17 17 0.0024 0.13 13.2 0.8 1 23 603 626 603 626 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.3	69	4.7	5.5	1	23	28	50	28	50	0.98
2	17	0.00061	0.033	15.1	0.2	2	23	78	100	77	100	0.91
3	17	5.8e-05	0.0032	18.3	2.4	1	23	123	145	123	145	0.98
4	17	0.18	9.8	7.3	0.7	3	23	151	171	150	171	0.96
5	17	1.2e-06	6.3e-05	23.7	0.8	1	23	176	199	176	199	0.97
6	17	1.7	92	4.3	3.2	2	23	209	231	208	231	0.85
7	17	0.0028	0.15	13.0	1.6	1	23	237	260	237	260	0.97
8	17	0.04	2.2	9.4	0.7	1	23	311	333	311	333	0.98
9	17	4.2	2.3e+02	3.0	1.3	2	23	361	383	360	383	0.93
10	17	0.067	3.6	8.7	5.6	1	21	406	426	406	428	0.95
11	17	0.05	2.7	9.1	0.2	2	23	433	454	432	454	0.96
12	17	0.00036	0.019	15.8	1.1	1	23	459	482	459	482	0.96
13	17	0.043	2.3	9.3	1.8	2	23	492	514	491	514	0.93
14	17	0.0077	0.42	11.6	2.4	1	23	520	543	520	543	0.95
15	17	5.2e-06	0.00028	21.6	3.1	1	23	547	569	547	569	0.98
16	17	0.00013	0.0071	17.2	2.0	1	23	575	597	575	597	0.98
17	17	0.0024	0.13	13.2	0.8	1	23	603	626	603	626	0.96

Sequence Information

Coding Sequence: ATGACGGTGTCCGAGCGGCAGAACGCGGCCGTCTTCCTCGAACACACAACCGTCCGACCCTTCGTCTACTGTCGCTACTTTTTCAAATGCTTCTTCTGTCACGAACACTACTCCGAAATCAACACATTACTCCAACACACAGATACCCACGAAATACCTAAAACAGACAAAATTCTTAAAGAGCTACTCCCAAAAGGAAAACGAACAGTAAAAGTGGATATATCCGCACTAAAATGCAAAATTTGCAACGAAAGCTTCAGCGATTTAGATAAAATCCGAGCGCATTTAACAGACGCACATAATAAAGAGTTCACCAAATCAGGAAACGGCCTAGTTGCTTATAACTTGACTGTTACCAACGGACAGTTTTCTTGTCACATATGCAGCAAAATTTTCCAAACATTTATACTTCTAAACCGACATATGAACGTGCACTTTAGTAATGCGATCTGCGAAACATGTGGGGTCGGATTTATGACGCATCAGCGTCTGATGCAACACAAAGAGATACATTTACCAGGAGGCTATCCATGCGAGAAGTGCAAAAAGGTTTACACCACCAGTTCCAACTTGAGGTATCACATAGAAAAGGCTCATGAGGGTTCCACGAGGATGCGAATGCTGCGATGTCCACACTGCCCTGAAAGATTCTTCGAGCATTTCCGAAAACTGCGGCATTTGAAAGAAGCCCATGGAATAACTTTCACTTTCGAATGCGAGACTTGCAAATCCACCTTTCCTAGCCGCCGAGCTTTGACGATGCACACAAACAAGTTCCATACGCAgaaaactcagtgcgaaatatgcaagaagaACGATAGACCAAGCATTAAAACAAGCGTGTGGCAAATGACGCTCCCGGAACGAAAAAACGCGGCCACTTTCATACAATACACCACAGTCAGGCCTTTCATATTCATGGGGACGTGTTTCAAGTGCTTCTACTGTGCTGAATACTTCTCGAAACTTCCGGCTTTACTTGACCATACCAACAACCACAAAATTCCGGAAGAATCAGAACTCTTAGAGAAATACGTTCACAAGGAAAAGAGGGTGTTACAAGTCGATATATCAGACTTGCATTGCCGCCTATGTAGTTTAAAATATCCTGATCTTCAAACAGTTAAAGAGCATTTACAAAATCAACACGAAAAGCCGTTCTATCTCGCCAGCAATGGCATGACTGAATATAACATGGAATTAAAGAACGGCGCCTTCGTATGTCACATCTGTGACAGCGATTTTCACACATTCTCGCTTCTTAACTCTCACATGAATTGTCACGTTGGTAAAGTGGTCTGCGAGACTTGCGGAGCCGGCTTCTTGAACAAATACTTCCTTTTAAAACACAAGGAAACTCATCTAGATAACAAATTTAATTGTAAGGAGTGCACAGCTGTATTCGGAAAGAAGAGTCAACTTAAATATCATACTAAAATCATTCATAAAGGGCAAGAGAGAGTCAAACCGAAAAAATGTCCGCAATGCAATGAAACCTTCAAGGAACATTACAGTAAAGTGATCCATCTTAAAGACGTCCACGGCGTGTCGCAGACATTTGAATGCCATATATGCAAAGCTAAGTTCACATCGCGATGGGCAATCACTCAGCATACAACCCGGTATCACACAGAGAAATATAAATGCGAGATTTGCTCTAAATGCTTCAGCATAGAGTCGAAACTAAAGCAGCATATGCGCGGACATACTGGTGAGAGGAACTTTATCTGTCCGATCTGCAAGAACGCGTACATGCACCAGATGACGCTTCGCAAGCATATGCGTAGTCATAGTGCTGCATACAAGTTTGTGTGTGCGGAATGTGGAGCAGGCTTTCATAACAAGAATGACTTCGTTAAACATACTAAGCAGTGGCACGCGCCTTCGAGTGATCTTATAGTTCGATGA
Protein Sequence: MTVSERQNAAVFLEHTTVRPFVYCRYFFKCFFCHEHYSEINTLLQHTDTHEIPKTDKILKELLPKGKRTVKVDISALKCKICNESFSDLDKIRAHLTDAHNKEFTKSGNGLVAYNLTVTNGQFSCHICSKIFQTFILLNRHMNVHFSNAICETCGVGFMTHQRLMQHKEIHLPGGYPCEKCKKVYTTSSNLRYHIEKAHEGSTRMRMLRCPHCPERFFEHFRKLRHLKEAHGITFTFECETCKSTFPSRRALTMHTNKFHTQKTQCEICKKNDRPSIKTSVWQMTLPERKNAATFIQYTTVRPFIFMGTCFKCFYCAEYFSKLPALLDHTNNHKIPEESELLEKYVHKEKRVLQVDISDLHCRLCSLKYPDLQTVKEHLQNQHEKPFYLASNGMTEYNMELKNGAFVCHICDSDFHTFSLLNSHMNCHVGKVVCETCGAGFLNKYFLLKHKETHLDNKFNCKECTAVFGKKSQLKYHTKIIHKGQERVKPKKCPQCNETFKEHYSKVIHLKDVHGVSQTFECHICKAKFTSRWAITQHTTRYHTEKYKCEICSKCFSIESKLKQHMRGHTGERNFICPICKNAYMHQMTLRKHMRSHSAAYKFVCAECGAGFHNKNDFVKHTKQWHAPSSDLIVR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -