Camp000478.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419680.1:973645-989435[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00018 0.0098 16.8 0.2 1 23 361 384 361 384 0.97 2 11 0.26 14 6.8 1.0 1 23 416 438 416 438 0.97 3 11 0.00085 0.046 14.7 3.3 1 23 443 466 443 466 0.97 4 11 0.00023 0.013 16.4 1.0 3 23 473 494 472 495 0.95 5 11 0.045 2.5 9.2 0.1 1 21 501 521 501 526 0.90 6 11 0.084 4.5 8.4 0.2 3 23 532 553 531 553 0.92 7 11 0.0061 0.33 12.0 1.4 1 23 558 581 558 581 0.96 8 11 0.003 0.16 12.9 0.1 2 23 609 630 608 630 0.96 9 11 1.4e-05 0.00077 20.3 0.2 1 23 636 658 636 658 0.96 10 11 2.6e-06 0.00014 22.6 2.4 1 23 664 687 664 687 0.97 11 11 1.8e-05 0.00098 19.9 0.0 1 23 694 717 694 717 0.96
Sequence Information
- Coding Sequence
- ATGAACACAACACAAGCAAATTTGCTACTGCAGCATGAGTTGCTATGCTGTCGTGTTTGTTTAATGTTGGACTGTAGACTGTACAATATTCATGAGTATAAACTCGCCGATACCTTTACTCGCATCTCTGGGACTACTGTGTCCAGAGACAGGCTGCCGCAGTACCTGTGCGCATACTGCCTCGTGTTGCTCCTCAAATGTGCATCCTTCAGAGACATGTGTCTCCGCACGCTGAAGCAACTTACACCCGCGCTGCACAAGGGGGCGCTTGATACAGATTATATTCGCAAATACCAACTTCCTCACCGGTCGCTCAACTTAACCCAAACTGAACTTGAAACAATAGATTTACTCCCATCAGAGGATGTACACAATGTACAAGATGAACACATTGTGTTGATAGACAACATCAATAAAGCTTATGCTCAGATAAAACCTGAAATACAAGAAGATTTAATTAATAATGATTTTGAGGATGAATTTGCTATAAAAGATAGTAAAATCAGCAAGAGAAAAACTGCGAATATAAAAACTGTAGAAGATAACTTGAAAACTAAAAAAACCTGCAAGAGACAGACAGTAAAGCAAAATATGGTCTTAAAAATCGGACGTGTCTGTAATGAAGGTTTGAATATTGATAAAAATCTAATAAAAGTGGAAGAGAATACAGAAACAATCGAAACTCCAGTAAAGAAAAATAATGAACATGTATTTAATGAAAATATGGATTTAGATGATAATCTAATGAAAATGGAAAAAGAAAATGCAGGAACATTGAAAATGATGACGATTGAAGGAAAAGAGGATGAAATAAATGAAGTTGGTGAAAAATCGGATAATAATTATGATATTTACTATGAACAAGTGCATGAAAAGAACGCGAACGAAAACGTGAAAATGAAAAGGAAAAAAGGCCAAAACGTAACACGTACGGAACGTAAAAAGAATGTGACGAAAAGCGGGAGAAAATCTAAATTTAATTTTGCCACATTTGAGAGTACCTACAATCATAAAATTGTAATTTTGACCAAGGAAGAGATCGCAGCACGCAAGAAGTCCGAGAGCTACCTGGAGTCACCGTTCAAGTGCGAGGACTGCGGGAAAGGGTTTGACGCGGAGTCCGCCTACAACAACCACCGAATCATGAGGCATAGCCCGAGCAACGGTTCGCACTCGTGTGATATCTGCACTTCGTACTACACGCACCGCCGTATCTATGGACACCGGAAGCGGCACCAGCAGAAGTACATTTGCAATGAGTGTGACTTCGTCTCCAGACATGGGCCACAAGCGATCAGGCACCACGCCACGCACACGGGCAAGACCTTCGAGTGCCCGCACTGCTTGAAGAGCTTCATAAAGAGCACGACGTACTTCTCGCACTTGCGCCTGTCGCACCCCGAGCGGAACGTGGACTGCCTCGAGTGTGGGGAGACGTTCGTCAGCCAAACCGGGCTCAGGCAACACAGGCAACGGATACATCACTTGAAATCACAAAAGTTTTTATGCGCTATCTGCTCAGCTAACTTCAACAGTTTAGAAGCGCTGAACAGACACACAGACACCGTCGGCGAGCACGGAGACCTGCGGCCGTGCGAGCAGTGCGGCGAGAACTGTGCGAGCGAGAACAAGCTACAGGAACATGTGGGAATGGCACATCCGACTGAGTCGCATCATTGTGAAGTGTGTAACGTGGCATTCTCAAATGCGGCCGCGTTGGACACGCACAACCGCCGCAAACACCTTGGGCAGCGCTACGCCGCGGCTCCCGGTAACAAGAGCAAACACGTGAACAAGCCAAGGAAAAGGCTTAATCAGTCGTGTATGTGCGAGCAGTGCGGCGCTATTGTGCCGAACCCAACGCTCCTCGCGTACCACATGCGCAGACACCTCGGCGTGAAACCGTTCGCCTGTCCACATTGCCCGAAGACATTCGCCATGCCACAATCTCTAAAAATTCACCTGAACGCGCACAGCGGTAACAAGCCGCACCAGTGCCCCGACTGCCCGCGAGCCTTCAACCGGAAGTTTAACTTGGATCGACATTACAACACTACGCATCTCGGTATACGCGGCTCATTTCCGTGTCCGATCTGCGGGCGCACGTCCACCGCCAAGGCCTCACTGCAGGTGCACATGCGCGCCGTGCACGGTGACGCGGGCTGGCCCAAGCGCGACCGCAGCAAACGGAAGAAAAACACGCAGCTAGATGATCAATGA
- Protein Sequence
- MNTTQANLLLQHELLCCRVCLMLDCRLYNIHEYKLADTFTRISGTTVSRDRLPQYLCAYCLVLLLKCASFRDMCLRTLKQLTPALHKGALDTDYIRKYQLPHRSLNLTQTELETIDLLPSEDVHNVQDEHIVLIDNINKAYAQIKPEIQEDLINNDFEDEFAIKDSKISKRKTANIKTVEDNLKTKKTCKRQTVKQNMVLKIGRVCNEGLNIDKNLIKVEENTETIETPVKKNNEHVFNENMDLDDNLMKMEKENAGTLKMMTIEGKEDEINEVGEKSDNNYDIYYEQVHEKNANENVKMKRKKGQNVTRTERKKNVTKSGRKSKFNFATFESTYNHKIVILTKEEIAARKKSESYLESPFKCEDCGKGFDAESAYNNHRIMRHSPSNGSHSCDICTSYYTHRRIYGHRKRHQQKYICNECDFVSRHGPQAIRHHATHTGKTFECPHCLKSFIKSTTYFSHLRLSHPERNVDCLECGETFVSQTGLRQHRQRIHHLKSQKFLCAICSANFNSLEALNRHTDTVGEHGDLRPCEQCGENCASENKLQEHVGMAHPTESHHCEVCNVAFSNAAALDTHNRRKHLGQRYAAAPGNKSKHVNKPRKRLNQSCMCEQCGAIVPNPTLLAYHMRRHLGVKPFACPHCPKTFAMPQSLKIHLNAHSGNKPHQCPDCPRAFNRKFNLDRHYNTTHLGIRGSFPCPICGRTSTAKASLQVHMRAVHGDAGWPKRDRSKRKKNTQLDDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00409592;
- 90% Identity
- -
- 80% Identity
- -