Camp000484.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419680.1:1031092-1042750[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0045 0.25 12.4 0.1 1 23 324 346 324 346 0.97 2 12 0.072 3.9 8.6 0.3 1 23 353 375 353 375 0.96 3 12 0.0019 0.1 13.6 0.5 1 23 379 401 379 401 0.97 4 12 0.00019 0.01 16.7 3.4 1 23 406 429 406 429 0.98 5 12 0.0072 0.39 11.7 0.1 3 23 436 457 435 457 0.96 6 12 0.0036 0.19 12.7 0.2 1 21 464 484 464 489 0.93 7 12 0.12 6.4 7.9 1.5 3 23 495 516 494 516 0.91 8 12 2.7e-05 0.0015 19.4 0.4 1 23 521 544 521 544 0.97 9 12 0.012 0.65 11.0 0.1 2 23 579 600 578 600 0.97 10 12 3.1e-05 0.0017 19.2 0.7 1 23 606 628 606 628 0.97 11 12 8.9e-06 0.00048 20.9 1.7 1 23 634 657 634 657 0.98 12 12 9.6e-07 5.2e-05 23.9 0.4 2 23 665 687 664 688 0.95
Sequence Information
- Coding Sequence
- ATGGATGTAACACAGACTGAGTCGTCAAATGAGGACCCCTTGTTATGCTGCCGCGCCTGCCTATCGACCGACGGAAGACTGTTCAATATTCATGAATATAAACTTGCTGATGCCTTCGCTCGTATCACAGGGACAACTGTTACCATGGATATGCCACAACACCTATGTGCATACTGTGGCATGCTGCTGCGCAAATGTGAATCTTTTAGAGCCATGTGTTTACACACACAACAATGTCTATTCACGGAGCTTAAAGACAAGCTGGACTTAGAGGATATTCGCAAAATAAACATCTCTACCCAGTTCCTTAACCTAACTTTAACAGATGTAAAAACTATTGAATGTATTGATATTCACCCAAAAGACATAAAACAGGAACCAATAAACATCATAGACATAGACGGCATTATAAATAAAACTGATTCAAGAACAGAATTGGCAAACGAAAAACATGTCCCTGCGAATAAACTTACATATATTAAAAAAAGGGTAAGAAAAATAGAGAATGCTTTTAAGAAAAAGAAAAGAATAACAATTGATGATGATAATGATGAAAAAGATGATGGTATTAAGGAAACTAAAATTAAAATGGAAGTTGAAATTGATGATAACAATAGCGATGAAATAAAAAAAGAGTTTGACATTGAAATTGAAGGTAATAATGATGACGGCAGTGACATTAAGATTGTTAAGAAAGCAATGAAAAGACAAGAGAAAAATAATAAGACTGTAGTTAAGAAGAATAAATTAGAAACGAATAATGTAAAATCTAAAGATACCAAAGTGAGAGAAGTAAAAAAGAAAAAAGTAAAAAGAAAGATGAGGAATCCAGAAAATAATTATATGCCCGAGTTTGATTTTGCTAAATTCGAGAGTGCACATGCTGTGAAAATTATTACACTGAGTAAAGAAGAGCAGCTGGAAGAGATCGCCGCCCGCAAGAAGTCGCAGAACTATTTGGAGTCGCGGTTTCGGTGCGAGACCTGCGGGAAGGGGTTTAACGCGGATCCCGCATTCAACAACCATCTAGCGAGGCACAGCCTGAGCGAAGGCGAATTTGCTTGCGAGATCTGCGCGATACGCTACAAGAAGAAATACAGATGGCAGGTGCATCAGGACGTGCACCGGCTCAAGTTTGTGTGCAACGAGTGCAACTACGTGTCTAGAGACAGAGGACAAGCGAAGAGACACTACGACATGCACGCAGGCAAGACGTACAAATGCCAGCACTGTGAGAAGAGTTTTAATAAGATGACGTCATACTTGACGCACATACGCGTGGTGCACCCCGCGCAGTGCGCCGCGTGCGACGTGTGCGGCGAGACGTTTGTGGGCGAGAACGGACTGAGGATGCATAAGAACAGAGCTCATGCCGAGAAATCGCAACAATTTAAGTGCACGACGTGTTCAGCGAACTTTGTCAGTTTAGAAGCTCTGAACAGACACACAGACACGCCCGGCGAGCACGGAGACCTGCGGCCGTGCGAGCAGTGCGGCGAGAACTGTGCGAGCGAGCACAAGCTACAGGAACATGTCACAGAGAGACATCCGAAGGAAATGCATCGGTGTGAGGAGTGCGACATGTCATTCCCCGACGCGTCGGCCCTCTCGGTCCACACTAAACGCTCGCACCTCAACCAGCGGCCGTCCGCGGCGGCAGACCGGCTCTACAACAGGAAAGTCGCTGCGCGCCGCCGCGCTGCGCTGCGCGGCGCCCCGCCCAAGGGGCAAGTGGTGTGCGAGCAGTGCGGACAGATCATGCCGAACGCTACCCTGCTGCGGTACCACCAACGTCGACACGACGGTGTGAAGCCGTTCGCCTGCAACCAGTGCCCGAAGACCTTCTACTACAAAACGTCGTTAGATGTACATATACTGACGCACACAGGGGAGAGACCGTTCCAGTGTCCGGAGTGTCCGCTTGCCTTCGTACTGAAGGGACACCTCAAGCGACACCATAAGACTGCGCACCAAGGAATCCGCGACAACATCCCGTGCTCTATCTGTGGCCGAGTGTTCTCCACCAAGTCCGCGCTCACCACGCACGTCAACTCTGTGCACCACGGGCAGCCGTGGCCCAAGAGGGACCGGAGCAAGCGGAAAACTAAACCCAACGCTTAA
- Protein Sequence
- MDVTQTESSNEDPLLCCRACLSTDGRLFNIHEYKLADAFARITGTTVTMDMPQHLCAYCGMLLRKCESFRAMCLHTQQCLFTELKDKLDLEDIRKINISTQFLNLTLTDVKTIECIDIHPKDIKQEPINIIDIDGIINKTDSRTELANEKHVPANKLTYIKKRVRKIENAFKKKKRITIDDDNDEKDDGIKETKIKMEVEIDDNNSDEIKKEFDIEIEGNNDDGSDIKIVKKAMKRQEKNNKTVVKKNKLETNNVKSKDTKVREVKKKKVKRKMRNPENNYMPEFDFAKFESAHAVKIITLSKEEQLEEIAARKKSQNYLESRFRCETCGKGFNADPAFNNHLARHSLSEGEFACEICAIRYKKKYRWQVHQDVHRLKFVCNECNYVSRDRGQAKRHYDMHAGKTYKCQHCEKSFNKMTSYLTHIRVVHPAQCAACDVCGETFVGENGLRMHKNRAHAEKSQQFKCTTCSANFVSLEALNRHTDTPGEHGDLRPCEQCGENCASEHKLQEHVTERHPKEMHRCEECDMSFPDASALSVHTKRSHLNQRPSAAADRLYNRKVAARRRAALRGAPPKGQVVCEQCGQIMPNATLLRYHQRRHDGVKPFACNQCPKTFYYKTSLDVHILTHTGERPFQCPECPLAFVLKGHLKRHHKTAHQGIRDNIPCSICGRVFSTKSALTTHVNSVHHGQPWPKRDRSKRKTKPNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00411739;
- 90% Identity
- -
- 80% Identity
- -