Camp008413.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419655.1:27545405-27559883[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00033 0.018 15.9 4.3 1 23 6 28 6 28 0.96 2 15 6 3.2e+02 2.6 1.0 1 9 37 45 37 47 0.84 3 15 0.002 0.11 13.5 2.6 3 23 48 68 46 68 0.96 4 15 6 3.2e+02 2.6 1.0 1 9 77 85 77 87 0.84 5 15 0.002 0.11 13.5 2.6 3 23 88 108 86 108 0.96 6 15 6 3.2e+02 2.6 1.0 1 9 117 125 117 127 0.84 7 15 0.002 0.11 13.5 2.6 3 23 128 148 126 148 0.96 8 15 1.8e-05 0.00097 19.9 1.0 1 23 157 179 157 179 0.96 9 15 0.00015 0.0081 17.0 0.1 2 23 186 207 185 207 0.95 10 15 0.00058 0.031 15.2 8.2 1 23 213 235 213 235 0.97 11 15 1.6e-09 8.9e-08 32.6 0.6 1 23 241 263 241 263 0.99 12 15 1.2e-05 0.00067 20.4 1.5 1 23 269 291 269 291 0.99 13 15 0.007 0.38 11.8 0.2 1 23 297 318 297 318 0.81 14 15 0.00058 0.032 15.2 0.1 1 23 324 346 324 346 0.97 15 15 9.1e-06 0.00049 20.9 1.2 1 23 352 374 352 374 0.99
Sequence Information
- Coding Sequence
- ATGCTCGGCAAGCGGCACTGCTGCGAGCGCTGCGGCAAGGGCTTCGCGGAGCGCCACGCCCTGCGGCGGCACGCGCGGGTGCACTCCGGCCTACCCGCGCCCAGGGACCACGCCTGCCACATGTGCGATAAGCGTGTCTGCTGCGAGCGCTGCGGCAAGGGCTGCGCGGAGCGCCACGCCCTGCGGCGGCACGCGCGGGTGCACTCCGGCCTACCCGCGCCCAGGGACCACGCCTGCCACATGTGCGATAAGCGTGTCTGCTGCGAGCGCTGCGGCAAGGGCTGCGCGGAGCGCCACGCCCTGCGGCGGCACGCGCGGGTGCACTCCGGCCTACCCGCGCCCAGGGACCACGCCTGCCACATGTGCGATAAGCGTGTCTGCTGCGAGCGCTGCGGCAAGGGCTGCGCGGAGCGCCACGCCCTGCGGCGGCACGCGCGGGTGCACTCCGGCCTACCCGCGCCCAGGGACCACGCCTGCCACATGTGCGATAAGCGCTTCACGGACGGCAGTCTCCTCGCGGCGCATATAGCGCGTCACACGGGGGAGTTACCGTGCGCTTGCCCGGTGTGCGACAAGCGCTTCCCGTCCGCGCGGCTGCTCGCCTCGCACGCGCTGGTCCACTCCGATCTCAAGCCGCACGCGTGCCACTTCTGCGAGAGACAGTTCCGGCACGAGTCTACGCTGCGCACCCACCTCCGCACGCACACAGGAGAGAAGCCCTACGTGTGCTCCGTCTGCGGGAAGACTTTTATACAGAACTCCAATCTCACGCTACACATGCGTACGCATACTGGTGAGCGACCTTATTCGTGTTCTGTGTGTTCGCGACGCTTCACTTCAGGCTCTTCACTAAAGACTCACGCTCGAACACACACCGGGGAAAAACCATATAGCTGCGAACTATGCGGGAAGAGGTTCGCGCGGCTCGACGTGCGCGCGCACCTGCGCCTGCACGCGGGCGAGCGCCCGTTCGCGTGCTCCGCGTGCCCCAAGGCGTTCGTCAGCGCCGCGCGTCTGCGCGACCACACGCGGATACACACAGGCGAGCGTCCATACGAATGCGCCATGTGCCCACTAAAATACCCGACCAAATCCCACCTAGTAAAGCACCTAAAGACGCACGAGACCAAAAAGAAACCGAAAAACAAAGTGCTCATAGTCCAACACATCGAACAGTACGACAACTACGCGAAAGACATCGGCGAGCAAGTGCCTTTGGAAGTGACGGGTGAATTGGTGCTTCAAGAGAACGGGGAGATTAAAACGGAGTTGTTGGTGGTGGATGAGCGGATCAGCGTGTACACGCGCGTGGACGGGTTCGTGGGCAGCGCGTTTGAGGAGCGCGTGGTGATACACCCGAAGATAACGGATTTTTAA
- Protein Sequence
- MLGKRHCCERCGKGFAERHALRRHARVHSGLPAPRDHACHMCDKRVCCERCGKGCAERHALRRHARVHSGLPAPRDHACHMCDKRVCCERCGKGCAERHALRRHARVHSGLPAPRDHACHMCDKRVCCERCGKGCAERHALRRHARVHSGLPAPRDHACHMCDKRFTDGSLLAAHIARHTGELPCACPVCDKRFPSARLLASHALVHSDLKPHACHFCERQFRHESTLRTHLRTHTGEKPYVCSVCGKTFIQNSNLTLHMRTHTGERPYSCSVCSRRFTSGSSLKTHARTHTGEKPYSCELCGKRFARLDVRAHLRLHAGERPFACSACPKAFVSAARLRDHTRIHTGERPYECAMCPLKYPTKSHLVKHLKTHETKKKPKNKVLIVQHIEQYDNYAKDIGEQVPLEVTGELVLQENGEIKTELLVVDERISVYTRVDGFVGSAFEERVVIHPKITDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -