Camp005563.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419679.1:6527186-6531555[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.41 22 6.2 0.3 2 23 92 114 92 114 0.95 2 21 0.00027 0.014 16.2 1.5 1 23 119 142 119 142 0.94 3 21 0.16 8.4 7.5 0.1 1 23 147 170 147 170 0.93 4 21 0.046 2.5 9.2 0.5 1 23 175 198 175 198 0.92 5 21 0.045 2.4 9.2 0.1 1 23 253 276 253 276 0.93 6 21 0.0018 0.095 13.7 1.0 2 23 352 373 351 374 0.95 7 21 0.00016 0.0084 17.0 2.6 1 23 379 402 379 402 0.92 8 21 0.18 9.6 7.4 1.3 1 23 407 430 407 430 0.91 9 21 0.027 1.4 9.9 0.2 2 23 436 458 435 458 0.96 10 21 0.05 2.7 9.1 0.4 2 23 466 488 465 488 0.95 11 21 0.0015 0.084 13.8 0.9 2 23 495 516 494 516 0.96 12 21 3 1.6e+02 3.5 0.2 1 23 580 603 580 603 0.91 13 21 0.25 14 6.9 0.0 2 23 634 656 633 656 0.94 14 21 0.012 0.65 11.0 0.8 2 23 679 701 679 701 0.96 15 21 0.0033 0.18 12.8 3.3 1 23 706 729 706 729 0.96 16 21 0.057 3.1 8.9 0.4 1 23 734 757 734 757 0.94 17 21 0.0035 0.19 12.7 1.1 2 23 763 785 762 785 0.91 18 21 0.00022 0.012 16.5 0.3 2 23 793 815 792 815 0.97 19 21 0.0019 0.1 13.5 0.1 2 23 822 843 821 843 0.97 20 21 2.7e-06 0.00014 22.5 1.1 1 23 849 871 849 871 0.95 21 21 3.4e-06 0.00018 22.2 2.5 1 23 877 900 877 900 0.98
Sequence Information
- Coding Sequence
- ATGGACACGCAAAAAAACCCCAAAGAAATACTCTGCCACTACGAAACTCACGACTGCGTCAACTTACCCGTAGCCGTTAAAAAGTACACTCGGCTGCGGGGCAACGCAGAAGCGGCAATCAAAGTTGAAATCACAGATTTACATTGCAAGCTATGCTCATCCGACGTGCATGATCTCGACGAGCTCATACAACATCTAATTGATAATCACGACGTTGAATACGATCTCGACATACCGAACTGCTTCCTCCCTTTCCGACTGACAGGCACGCCCACCTGCGGCACGTGCAACTTGGAATTTGATCTATTCGAGTATCTTCTACGACACGCGAACAGAGAACATCTGGAACACAGTTTCATTTGCGAGATTTGCGGGAAAAGTTTCTTTTCCGAACGATATTATACAACGCATTTAAAAGATTTCCATAAGGAAGGCGGTTACGAATGCGAATACTGTGATATGGTACTCTCCTCTAATCCGAAGAAAGCTCTCCACGAGCAGACTCTCCATCAAGCCAAAGTGTACAAGTGCTCGATTTGTGACGAAACTTTAAAGAGTTTCTATTTAAAAAATGTGCATTTGTCTGAAGTGCATGGGGTTGAAGAAAAGAGAATTAAATGCCCACATGGCAAACCAAAGGATAAGAAGCATCAGAAAACCGCGCTGCGGCGCTACAAACTCTCTTTGATTCGGAGGAACGTCCACCTCATACTAGAGTACGGAAACGTGATGCCCTTCATGTGGGCGCGCTCCACCTATCTCTGCTTCTATTGCAGGCAGCCCGCCAAAGATCCCTACGAACTAAGAGATCACATACAGGCTATGCATCAGTTCCTCGATCTCGACCAAATCCTGAACATGAGGATATCAAACACGTGGGATAGTGAGGTCCCCGTCAAGCTAGACGTCAAAGACATCTCTTGCAAACTATGCATACAACCCATCTCTGATTTACAAGGGCTCATTGACCATTTAATCCAAGTTCACGAAGCAGATTATGACACTTCGATAAATGACTGCCTTTTCTCCTTTGAGCTCGGTAACGAAAAAGTTACTTGTCCTATATGTAACATACAATTCAATTACTTCGAGTACCTACTCCGACACGCGAACAAGCATCACCTCAACCACGACTTCACATGCAACGTGTGCGGAAAATCTTTTCACCGCAAAAATGCGCTTGCGACACATTTCAATGACTACCACAAGGAAGGTGGATATCCTTGTGATATATGTGGTCTTGTCTGCACTACAGCCGCGAGACGGTACAACCACAAAAAGAACTACCATCTGATCGACCATTTGAAGTGTCCTTACTGTCCGGAGATTTCTAAGAGTAAATATTACAAGAACCTCCATTTGGCTACTGTTCACGGCGTAGAGAAATGCCGCAGCGAGTGCCCTCATTGCCAAAAGCTGTTTCCGCAGAAGGGTATAATGCTCGCACACGTTCGACGGGTACATTACAAGGAGAGGAACGTGGaatgcgaggtctgtagatacaagttcttcaacaaggcgcacctggacgcgcacatggtgaaacacacgggcggacagatgtacacgtgcgacgtgtgtgctaaagcgtatctgaggaagaGTGCAAAAATCAGTTCAGTGGAGGATAAACATAAGAAAATGGAAATCAAACGTAAACAATTGATCAAACGGCGGAACGTAGAGTACGTTCTCCAGTACGGCAACGTGACGCCCTTCCTGTGGTACAAGGGCAAGTACCGGTGCTTCTACTGCACAGAGCCCATGAAGAACCCGGAGATCTTGCGCGAGCATACCGCTAAAGTCCACCAGTTCGCCAACCTCGAGCTGGCCGTCTTCGACAGAACTAAAGACAACAGAAACAAAGACGCCGCTATCAAAATAGACGTCACTGGCATCTCGTGCAAACTCTGCTCCCAACAAGTTCCAGACCTGGAACAACTGATCTCCCACCTCATAATCGGTCACGATGCTGAGTACGATGTCAGCGTCCCTAACTGCCTGCTGCCCTTCCAACTAGACAAGGACAACCCCACTTGTCCAACTTGCAATATGAAGTTCGTCTTCTTCGAATACTTACTGCGTCACGCCAATAAGTACCACTTATGCCACGAGTACATTTGTGATGTCTGCGGCACCAGCTTCCAAGGGGAAAATCATTTAAAGATGCACCATAGATACTACCATAGGGAAGGAGGGTACACCTGTGACTATTGCGACGTCAGCTTAACAACTCTGTCTAAAAAGATTATTCACGAGAAAAACGTTCATATGGTCAATTTGCTGaaatgtcctcattgtccggagacgttcaaaagtccttattttaagaagctgcatttagccaacgtgcacggtgtagaagaattgaaaataaagtgccaatattgtcctaaagtatttccacaggagagcatcatgtctcggcatatgaggagagttcatttaagagaaagaaacgtggagtgtgaagtatgcggcgagaagttcttcggaccttacgacgtgaagcttcatatgctgaaacacagcggggagaaagctttcatctgctccgtctgtggaaagaagttctctaaaaagaGCAATTTAAATTCACACTCTGCTATGCATACTGGCAAAAAAGCATACACCTGCAATATATGCAACAAGGCCTTCGCGTATCACACCAACCTCACCATGCACATGAAGAGTATGCATCAGAACAACGTGCTCAAGGAAGATCAGGATCACATCACGGAAGAGGATCAGAGCACGGAAGTTGTGGAAGTGTATGCACATACACAGGAGTTTATACATGATGACTTGGAGGGCGCTGAAGTAGTTGGGACGTATGTCGTCCAATAA
- Protein Sequence
- MDTQKNPKEILCHYETHDCVNLPVAVKKYTRLRGNAEAAIKVEITDLHCKLCSSDVHDLDELIQHLIDNHDVEYDLDIPNCFLPFRLTGTPTCGTCNLEFDLFEYLLRHANREHLEHSFICEICGKSFFSERYYTTHLKDFHKEGGYECEYCDMVLSSNPKKALHEQTLHQAKVYKCSICDETLKSFYLKNVHLSEVHGVEEKRIKCPHGKPKDKKHQKTALRRYKLSLIRRNVHLILEYGNVMPFMWARSTYLCFYCRQPAKDPYELRDHIQAMHQFLDLDQILNMRISNTWDSEVPVKLDVKDISCKLCIQPISDLQGLIDHLIQVHEADYDTSINDCLFSFELGNEKVTCPICNIQFNYFEYLLRHANKHHLNHDFTCNVCGKSFHRKNALATHFNDYHKEGGYPCDICGLVCTTAARRYNHKKNYHLIDHLKCPYCPEISKSKYYKNLHLATVHGVEKCRSECPHCQKLFPQKGIMLAHVRRVHYKERNVECEVCRYKFFNKAHLDAHMVKHTGGQMYTCDVCAKAYLRKSAKISSVEDKHKKMEIKRKQLIKRRNVEYVLQYGNVTPFLWYKGKYRCFYCTEPMKNPEILREHTAKVHQFANLELAVFDRTKDNRNKDAAIKIDVTGISCKLCSQQVPDLEQLISHLIIGHDAEYDVSVPNCLLPFQLDKDNPTCPTCNMKFVFFEYLLRHANKYHLCHEYICDVCGTSFQGENHLKMHHRYYHREGGYTCDYCDVSLTTLSKKIIHEKNVHMVNLLKCPHCPETFKSPYFKKLHLANVHGVEELKIKCQYCPKVFPQESIMSRHMRRVHLRERNVECEVCGEKFFGPYDVKLHMLKHSGEKAFICSVCGKKFSKKSNLNSHSAMHTGKKAYTCNICNKAFAYHTNLTMHMKSMHQNNVLKEDQDHITEEDQSTEVVEVYAHTQEFIHDDLEGAEVVGTYVVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -