Camp000392.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia amplana
Gene Symbol
-
Assembly
GCA_948474715.1
Location
OX419680.1:118092-124837[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.34 18 6.5 3.2 3 23 214 235 212 235 0.92
2 16 0.035 1.9 9.6 2.5 1 23 243 266 243 266 0.96
3 16 0.0004 0.021 15.7 0.8 1 23 271 293 271 293 0.98
4 16 0.031 1.7 9.8 1.2 8 23 325 340 319 340 0.89
5 16 0.0009 0.049 14.6 8.4 1 23 348 370 348 370 0.98
6 16 0.0004 0.022 15.7 5.7 1 23 376 398 376 398 0.99
7 16 1.3e-05 0.00072 20.3 5.1 1 23 404 426 404 426 0.99
8 16 6.5e-06 0.00035 21.3 3.7 1 23 432 454 432 454 0.99
9 16 3.7e-06 0.0002 22.1 1.9 1 23 460 482 460 482 0.98
10 16 0.00058 0.031 15.2 2.1 1 23 488 511 488 511 0.98
11 16 0.00017 0.0091 16.9 4.3 2 23 518 539 517 539 0.97
12 16 0.0015 0.081 13.9 4.1 1 23 545 567 545 567 0.99
13 16 2e-05 0.0011 19.8 5.9 1 23 573 595 573 595 0.98
14 16 1.9e-05 0.001 19.9 2.9 1 23 601 623 601 623 0.99
15 16 1.3e-05 0.0007 20.4 6.8 1 23 629 651 629 651 0.98
16 16 1.1e-05 0.00061 20.6 4.3 1 23 657 679 657 679 0.99

Sequence Information

Coding Sequence
ATGGAGGTGATGCGTGCGTGTCAGTGCTGCCTGCGGTGTCCCCCGGACAAGGACCTGACCACGCCGTACACACATCTCGGCAACACAGAGATTTACGCCGACATGATCAAACAGTGCTTTGACATAAATCTGGTGGTGGGCGGCTCGGGCTTGTGTGGCATCTGCTCTATGTGCGTGGGCCGCCTGCGAGACGCGAGCGACTTCAAGCTGCAAGTGCAGCGCAGCCAGGCAGAGCTGCAGGCGCGCACGCTGGGTGCAAGTGGTGTTAAAGGCGAAGAGCCCCTGGTGAAGCCGGAGAGGCCGGATGAAGATGGCGCACCGGGTGAGATGCTGCATGAGGAGCTCCTGATCAAGCCGGAGCTGGCGGGCGGTGATGATGATGGCACAAGTGATGATGATGGCACAAGTGATGATGATGGCACAAGTGATGAGATGTCGCCGGAGGAGCGCGCGGTCAGGGCGCAGGTGTGGGACGCGGCGAGTGACGAGCACTGCGTGTCGCGGCTGCCGGTGCCGGTGCCGGTGTATTCGGAGGGCAGCGCCGCCCGCGGCATGGAACAGCTCGCGATGGGTTGTTCCGTGGTGCTCGAGCGCCTCCGTGACGACGCGACTGTTCACAGTGGAGACAAACCATATGGCTGCGGACACTGTGACGAACATTTTATAAATATGTCTATTTTAAGAAAACACATACATGATACTCACTTATCGTCTGGATCCAAGAAATTCACTTGTGATTTTTGTAACTTTACATTTCGAACTAAATTGCTTGTATTTGAGCATGAAAAAAAGGAACACGGTGTTACAAATTTCATGTGTGCTGAATGTGAGTATTCAACAAGTTCCAAGAAGAGTTTGCGGATCCATGTAAAGAGTCACTCTGCGGAGAATCTATTTAATAGTCAGTATAAAAGTGAAATACACAAACACCAAACAATTGGGGAAAAGCCTCTTAAGTGTACAAAGCGTGGTCTCAAATGCAGTGTTAAATCAAACCTGCGACGTCACCAGAAGACGCACACCAGAAGACACCaaaagccgtacacatgttgtcattgtggttacaagtgccgtgataaatcatacttacaattacaccagatgatacatactggggcgaagcagtttcaatgtagctactgcgactacagctgcgggcagaaaggacacatgctatcacaccagaggacacacaccggggataagccttttcagtgtagtaactgcgattacaaatgcaggcgaaaatatgaactgaaaatacacatgatgacacacactggggcgaagccatttcaatgtagcatctgcgactacagttgcacgcagaaaagatccttgctagttcaccagaggacacacaccggagagaagccttttcagtgtaactactgtgattccaaattcagtctaaaatcaagcctaaaaaggcacattatgatacacactggggcgaagccatttcaatgtagctactgcgactacagcggcagggagaaagcacacttgctattacaccagcagacgacacacaccggggagaagcctttacagtgtagtcactgcgattacaaatgccgtcgaaaaccagacctaaaacaacacattatgatacacactgggacgaagccatttcaatgtagcaactgcgactacacgtgcatgcagaaacgatccttgctaatacaccagatgaaacacaccggggagaagcattttcagtgtagtcactgcgattacaaatgcagtcgaaaatcagaccttaaaatacacatgacgatacacagtggggcgaggccatttcaatgtagcaactgcgaatacaggttcgatcgtaaaggacacttgctagttcatcagatgacacacaccggggagaagccttttcagtgtagtcactgcgattacaaatgccgtgaaaaatcaaacctgaagagacacatgatgatacacactggggcgaagccatttcaatgtagcaactgtgactacaggtgcaggacgaaaggaaacttgctaaaacaccagaggatacacaccaggggcgaacccatttcagtgtag
Protein Sequence
MEVMRACQCCLRCPPDKDLTTPYTHLGNTEIYADMIKQCFDINLVVGGSGLCGICSMCVGRLRDASDFKLQVQRSQAELQARTLGASGVKGEEPLVKPERPDEDGAPGEMLHEELLIKPELAGGDDDGTSDDDGTSDDDGTSDEMSPEERAVRAQVWDAASDEHCVSRLPVPVPVYSEGSAARGMEQLAMGCSVVLERLRDDATVHSGDKPYGCGHCDEHFINMSILRKHIHDTHLSSGSKKFTCDFCNFTFRTKLLVFEHEKKEHGVTNFMCAECEYSTSSKKSLRIHVKSHSAENLFNSQYKSEIHKHQTIGEKPLKCTKRGLKCSVKSNLRRHQKTHTRRHQKPYTCCHCGYKCRDKSYLQLHQMIHTGAKQFQCSYCDYSCGQKGHMLSHQRTHTGDKPFQCSNCDYKCRRKYELKIHMMTHTGAKPFQCSICDYSCTQKRSLLVHQRTHTGEKPFQCNYCDSKFSLKSSLKRHIMIHTGAKPFQCSYCDYSGREKAHLLLHQQTTHTGEKPLQCSHCDYKCRRKPDLKQHIMIHTGTKPFQCSNCDYTCMQKRSLLIHQMKHTGEKHFQCSHCDYKCSRKSDLKIHMTIHSGARPFQCSNCEYRFDRKGHLLVHQMTHTGEKPFQCSHCDYKCREKSNLKRHMMIHTGAKPFQCSNCDYRCRTKGNLLKHQRIHTRGEPISV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-