Basic Information

Insect: Cydia amplana
Gene Symbol: -
Assembly: GCA_948474715.1
Location: OX419675.1:12112632-12117153[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.4e-05 0.0013 19.6 5.4 3 23 225 246 223 246 0.96

2 14 1.3 72 4.6 0.1 14 23 257 266 251 266 0.86

3 14 1.5e-05 0.00084 20.1 6.7 1 23 280 302 280 302 0.99

4 14 2.8e-05 0.0015 19.3 3.4 1 23 308 330 308 330 0.99

5 14 3.3e-05 0.0018 19.1 5.7 1 23 336 358 336 358 0.99

6 14 5.5e-05 0.003 18.4 5.0 1 23 364 386 364 386 0.97

7 14 9.1e-07 4.9e-05 24.0 7.6 1 23 392 414 392 414 0.99

8 14 1.8e-05 0.00097 19.9 5.6 1 23 420 442 420 442 0.98

9 14 4.6e-06 0.00025 21.8 1.1 1 23 448 470 448 470 0.99

10 14 4.1e-05 0.0022 18.8 7.3 1 23 476 498 476 498 0.99

11 14 0.0018 0.095 13.7 5.7 1 23 504 526 504 526 0.98

12 14 8.9e-07 4.8e-05 24.0 4.8 1 23 532 554 532 554 0.98

13 14 7.8e-05 0.0042 17.9 1.9 1 23 560 582 560 582 0.99

14 14 0.0046 0.25 12.4 7.3 1 23 588 610 588 610 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.4e-05	0.0013	19.6	5.4	3	23	225	246	223	246	0.96
2	14	1.3	72	4.6	0.1	14	23	257	266	251	266	0.86
3	14	1.5e-05	0.00084	20.1	6.7	1	23	280	302	280	302	0.99
4	14	2.8e-05	0.0015	19.3	3.4	1	23	308	330	308	330	0.99
5	14	3.3e-05	0.0018	19.1	5.7	1	23	336	358	336	358	0.99
6	14	5.5e-05	0.003	18.4	5.0	1	23	364	386	364	386	0.97
7	14	9.1e-07	4.9e-05	24.0	7.6	1	23	392	414	392	414	0.99
8	14	1.8e-05	0.00097	19.9	5.6	1	23	420	442	420	442	0.98
9	14	4.6e-06	0.00025	21.8	1.1	1	23	448	470	448	470	0.99
10	14	4.1e-05	0.0022	18.8	7.3	1	23	476	498	476	498	0.99
11	14	0.0018	0.095	13.7	5.7	1	23	504	526	504	526	0.98
12	14	8.9e-07	4.8e-05	24.0	4.8	1	23	532	554	532	554	0.98
13	14	7.8e-05	0.0042	17.9	1.9	1	23	560	582	560	582	0.99
14	14	0.0046	0.25	12.4	7.3	1	23	588	610	588	610	0.98

Sequence Information

Coding Sequence: ATGGACGTGACGCACGCGTGTCGCTGCTGCCTGCGGTGTCCTCCGGACAAGGACCTGACGACGCCGTACACACATCTCGGCAAAACGGAGATATATGGCGACATGATCAAAGAGAGCTTCGATATACATCTGGTGGTGGGCGGCTCGGGCTCGTGCGGGATCTGCTCTATGTGCGTGGGCCGCCTGCGAGACGCGAGCGACTTCAAGCTGCAAGTGCAGCGCAGCCAGGCGGAGCTGCAGGCGCGCACGCAGGGAGCGAGCGTCAAGGGTAGGGAAACACTGCCCATCAAACGAGTAGTGAATTGTAAGGAAGAATCTGCCGTTGAGCCAGAGAATCCAGAAATGCAGGAGGAAGATGGGACCAGTGAGCCTGTATCAGGTGAAGAGCCCCCGGTCAAACCAGAGATGCTGGAAGAAGATCTAACACCTGATGAGATATTGCATGACATGCTCCGGTTAAACATGGTGGCCGGAGATGAAGCGAGCGACGAGGATGACCCGCTGTTGGGTGAAGAGCTCCTAGTCAAGCCAGAGTCGACGAACGAAGATGTTACAGGTGATGAGATGACGCTGTCCGCCCGCGCCAGGGAACAGCTCGCGATGGCTTGTTCCGTGGTGCTCGAGCGCCTCCGCGGCGACGCGACTGAACACAGTGGAGACAAACCATATGGTTGCGAACACTGTGGCAAACATTTCAGAAACAAATCTTTTTTAAGAAAACACATTCAATACACCCATTCATCGATCGGAAAAAAACCATTTGCTCAACCTGACCTGCGGCGTCACCAGAAGACACACAACCGAAGGCACGAGAgaatactcactggaaaacagtcttacaaatgtagccactgtgattacaaatgtagccggaagtcagacttacaacaacacctgatgatgcatactgaggagaagccatttaaatgtagccactgcgactacaagagcaatcggaaagaaaacttactagttcaccaaagaatacacaccagagagaagccgtacacatgtagtcattgcgactacaagtgcagtaatagttcagccttacgaaggcatgaaatgacacatactggcgaaaagccttttcagtgtagccactgtgattacaaatgcagtcagaagtcaaacttacaactacacctggtgatacatactggggcgaagccatttaaatgtagccactgtgattacaaattcagtcagaagtcacacttacaacgacacttgatgatgcatactggggtgaagccatttcagtgtagccactgtgattacaaatgcagtcagaagtcaaacttacaactacacctgatgatacatactggggcgaagccatttaaatgtaatatctgcgactacaagagcaatcggaaaggagacttacgagttcaccaaagaatacacaccggagagaagccgtacacatgtagtcattgcgactacaagtgcagtgatcgttcaaccttacgaaggcatgaaaggacacatactggcgaaaagccttttcagtgtagccactgtgattacaaatgcaatcagaagccatacttacaacaacaccttaccatacatactggggtgaagccatttaaatgtagacactgtgattacaaattcagtcagaagtcaaacttacaaaatcacctgatgatacatactggggcgaaaccatttaaatgtagatactgcgactacaagagcaatcggaaaggaggcttactagttcaccaaagaacacacaccggagagaagccgtacacatgtagtcattgcgactacaagtgcagttggaaatcacagttaaaaagacaccagacgatgcatgctacgacgaagccataa
Protein Sequence: MDVTHACRCCLRCPPDKDLTTPYTHLGKTEIYGDMIKESFDIHLVVGGSGSCGICSMCVGRLRDASDFKLQVQRSQAELQARTQGASVKGRETLPIKRVVNCKEESAVEPENPEMQEEDGTSEPVSGEEPPVKPEMLEEDLTPDEILHDMLRLNMVAGDEASDEDDPLLGEELLVKPESTNEDVTGDEMTLSARAREQLAMACSVVLERLRGDATEHSGDKPYGCEHCGKHFRNKSFLRKHIQYTHSSIGKKPFAQPDLRRHQKTHNRRHERILTGKQSYKCSHCDYKCSRKSDLQQHLMMHTEEKPFKCSHCDYKSNRKENLLVHQRIHTREKPYTCSHCDYKCSNSSALRRHEMTHTGEKPFQCSHCDYKCSQKSNLQLHLVIHTGAKPFKCSHCDYKFSQKSHLQRHLMMHTGVKPFQCSHCDYKCSQKSNLQLHLMIHTGAKPFKCNICDYKSNRKGDLRVHQRIHTGEKPYTCSHCDYKCSDRSTLRRHERTHTGEKPFQCSHCDYKCNQKPYLQQHLTIHTGVKPFKCRHCDYKFSQKSNLQNHLMIHTGAKPFKCRYCDYKSNRKGGLLVHQRTHTGEKPYTCSHCDYKCSWKSQLKRHQTMHATTKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -