Camp005559.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419679.1:6515624-6519646[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00015 0.0081 17.0 5.2 1 23 24 46 24 46 0.99 2 24 0.013 0.68 11.0 1.5 2 23 75 97 74 97 0.94 3 24 0.042 2.3 9.3 0.9 2 23 120 142 119 142 0.96 4 24 0.00021 0.011 16.6 0.7 1 23 147 170 147 170 0.94 5 24 0.0044 0.24 12.4 2.7 1 23 177 200 177 200 0.95 6 24 0.091 5 8.3 0.3 1 23 235 258 235 258 0.95 7 24 7.9e-05 0.0043 17.9 3.3 1 23 326 349 326 349 0.95 8 24 0.6 32 5.7 0.5 3 23 377 397 375 397 0.96 9 24 0.16 8.7 7.5 1.0 2 23 420 442 419 442 0.93 10 24 0.0027 0.14 13.1 0.1 1 23 448 470 448 470 0.95 11 24 6.5e-05 0.0035 18.2 2.6 1 23 478 501 478 501 0.96 12 24 0.066 3.6 8.7 1.1 1 21 506 526 506 529 0.80 13 24 0.0025 0.13 13.2 2.4 1 20 536 555 536 556 0.95 14 24 0.00073 0.04 14.9 0.8 3 23 567 587 565 587 0.94 15 24 0.0066 0.35 11.9 4.1 1 23 593 615 593 615 0.98 16 24 3.1e-08 1.7e-06 28.6 1.9 1 23 621 643 621 644 0.96 17 24 0.00017 0.0091 16.9 4.5 1 23 688 710 688 710 0.98 18 24 0.064 3.4 8.8 0.5 2 23 780 802 779 802 0.96 19 24 0.011 0.59 11.2 1.1 3 23 810 830 809 831 0.94 20 24 0.87 47 5.2 1.4 1 23 836 859 836 859 0.84 21 24 0.58 31 5.8 6.0 1 23 864 887 864 887 0.95 22 24 6.5e-05 0.0035 18.2 1.8 1 23 892 915 892 915 0.97 23 24 0.00092 0.05 14.5 0.1 1 23 921 943 921 943 0.97 24 24 0.00094 0.051 14.5 0.2 1 23 951 973 951 973 0.98
Sequence Information
- Coding Sequence
- ATGAGGATACTCCTGCTCAAGGTCCTACAGAACTCCACAGCTATGCCCTTCACAAGGAGGGGCAACACCTACAAATGTTTCTACTGCCAGAAAATCTTCCATAAGGCCAGCGATTTAAAAAATCACACCAACACCCACGTATACGTCGAACAGAAAGTTAGAACTGTCAATCGTTGCGGAGATGGTCTGAGAAGCTTTATCAAACTAGATGTTACTGAGTTAAAATGCAAAACATGCGACAGCAAATTTAACTCACTAAGAAACTTCTTAACTCATCTGAATGAAGTTCACAACGAAGGACTGGATATGGAACCTTTAAAATATATAGACAGCTATAAATTATCTGACAGTGAAATGAAATGTCTCATTTGCGACGAGAATTTTCAATATTTCAATCAGCTACGCCTGCATACGTTGAGAATGCACAAAGTGAGGCAGTTCATGTGCGAGACCTGCGGCATCAGCTACGCTACCAAAAAAAGTTTAGCCAAACATCACCAAGGCGCTCACGAAACTAATGAGAAAACATACACCTGCAAGCAATGCGGCAAGAACTTCCCGACTCCGCATAAACGTGATAATCATGAGAAGCGAATACACGATATGAAAGCTAGCACATGTGATATTTGTAACCAAATCTTAGGCAGCGCGTTTAAAAAGGCAACCCACTTAGCCAACGTCCATAATGTTAGGCAGTCCGAATTTAAATGCGAAAGTTGTCCTAAAGTCTTCCTGCTTGCAAATCAGCTAGATATCCACAAGAGGAGGATACACATGAAAGAAAAAACTAAAGTTTGCGACGTGTGCGGCGACAAATTCTTTGAAAGAAGGCCCTGGTGTTACACACCAAGATACACACGGGAGAGAAGCCAGAGCACAGACCAGGGCGCCCGCAATCGGGAGGAATTGACCAAACTGCTCGCCATTGTGATAGAAAACTCCACCGTCATACCTTTCAAATGGCAGGCCAACGGCTTCCTGTGCTTCTACTGTGGCTGCCCCTTCACCGACCCTTCGGCCCTCAAGCATCACACCAAGACTGAACACGAGAACGCCAAACTCAAAACCATCTTGAGAACCACTGTTGCGAAAAGCAGGAGCATTAAACTCGACGTGTCGGAGCTAGCTTGCAAGAAATGCAGCGAACCTATGAGCAGCTTACAACAGTTCTTCATCCATATCAAACAACACGGTTTTACTATAGATGAAGAGGCTTCACATTGCTGCTATCCATTCATTCTTACTGATAACGATATGTCCTGTCTTGAATGTGGGATGTCTTTTAGATTTTTCGGCCCACTTTTAATTCACACACATAAATATCATACCAAATCTGAGCCGTTCCTTTGTGAAATATGCGGGCAAGGATTTATAGCTAAAGCGAACGTGGAAAACCATCGGAAAATACACGACAAAACGTCCAACTGCAACTATAATTGCAAAGAGTGTGACGAAACATTCTCTACACAGTACAAACTTACTTATCACTTCCAAAAAGTCCACACTCCAGCCAAATTCAAGTGTCCTAAATGTCCGGAAGTTCTAGGCAGCAAATACTTAAAGAAACATCATTTAGCTTTCGTACATGATGTGAAAAGCGCGCAGTTTAAATGTGACGAGTGTCACAAGATTTTCTCGTTGAAAAACAAGTTGCTTCGGCATAAGTCCTGTGTGCATTTGAAAGAAAAAAACATTGCCTGCGAAATTTGTGGGCATAAAGTGTTCAGTAAAGATCTTTTGAAGCGGCATATGGTGAAGCATGATGATGCTAGACCGTTTGAGTGCGATTTCTGCAAGAAAACATTTCAAAGAAAGAAGACTTTGGAGTTTCACAGGAGGATACATACGAACGACAAGCGGTATCAGTGCAAGGAGTGCGGGAGATCGTTCGTGCAGTGGACCAGCCTCAAGCTGCATATGAGGGTGCATCATTCTAATCCAAAGAAGCACGATCTCCGCGTCCCAACGCAGATCGAATGGCAAAAGGCAGCCGCCCGTCGCTACGTCCATTCCGTCCTGTCCCACTCCTCCCTCCTCCCCTTCCGTTGGCGCGGCAACCGCTACATCTGCTTCTACTGCCACTACACCTTCACCGAGGCAACCAGCTTGAGGACACACACCAGAACTCACCAAAACCTGCCCATCATGAAGCATTTAACACAAACTAGAGACTTCGCTCCCATAAAAGTTGATATCGGAGAAACTTTAAAATGTCTCAAGTGTAAACATGAGGAACATAGCTTGGAAGGGCTGATTTTACATTTAAAAGGCCATAAAGTAATAGGAGATATAGAGCAGGAGTGTTTCTTACCTTTCAAGCTAGCTGACAATCAGATATCTTGCTTGAAATGTGCTAAATCCTATCAGTCTTTCGGCATGCTTTACTCCCATATGAATAAAGTCCATTTGGAAGGCACTAAGCGCATTTGCGAGGCGTGCGGTGAAAGTTTTTTCTCAGATTTCAGTTTAAGAAAGCATGTGCAGTCGCATCATTCTAATTCCAACTTCAAATGCAGCCGTTGCAACGAGAAATTTAAGTTAGACGCGAATAGAATTAGCCATGAATATAAAGAGCATAACATTAAGTCTTTCAAATGTTATAAATGCGATGAAACGTTCGGTTCGCATTATTTAAGACGTCTTCACCTGCATAGCACTCATATGAAGATGGAATTCACGTGCAAGGAGTGTTCTAAAACCTTTCTAAACAAGTCTTTACTCAATCGACACGTGAATAGGGTTCATTTGAAGGAGAAGAACTTCACTTGCCCGGTGTGTGGCGACAAGTTCTTTGATCTGGGATCTTTGAACGCGCATGCGAAGAGGCATTTGGACAGCTCGCAGAAGAGTTTTCAATGTAAGATTTGCTTTTTGGTTTTCGGTGGGAAGATGGAGCTGAATGATCATATGGTGACCCATGCGGGGCAGTCGCTGTCATTGAAGTAA
- Protein Sequence
- MRILLLKVLQNSTAMPFTRRGNTYKCFYCQKIFHKASDLKNHTNTHVYVEQKVRTVNRCGDGLRSFIKLDVTELKCKTCDSKFNSLRNFLTHLNEVHNEGLDMEPLKYIDSYKLSDSEMKCLICDENFQYFNQLRLHTLRMHKVRQFMCETCGISYATKKSLAKHHQGAHETNEKTYTCKQCGKNFPTPHKRDNHEKRIHDMKASTCDICNQILGSAFKKATHLANVHNVRQSEFKCESCPKVFLLANQLDIHKRRIHMKEKTKVCDVCGDKFFERRPWCYTPRYTRERSQSTDQGARNREELTKLLAIVIENSTVIPFKWQANGFLCFYCGCPFTDPSALKHHTKTEHENAKLKTILRTTVAKSRSIKLDVSELACKKCSEPMSSLQQFFIHIKQHGFTIDEEASHCCYPFILTDNDMSCLECGMSFRFFGPLLIHTHKYHTKSEPFLCEICGQGFIAKANVENHRKIHDKTSNCNYNCKECDETFSTQYKLTYHFQKVHTPAKFKCPKCPEVLGSKYLKKHHLAFVHDVKSAQFKCDECHKIFSLKNKLLRHKSCVHLKEKNIACEICGHKVFSKDLLKRHMVKHDDARPFECDFCKKTFQRKKTLEFHRRIHTNDKRYQCKECGRSFVQWTSLKLHMRVHHSNPKKHDLRVPTQIEWQKAAARRYVHSVLSHSSLLPFRWRGNRYICFYCHYTFTEATSLRTHTRTHQNLPIMKHLTQTRDFAPIKVDIGETLKCLKCKHEEHSLEGLILHLKGHKVIGDIEQECFLPFKLADNQISCLKCAKSYQSFGMLYSHMNKVHLEGTKRICEACGESFFSDFSLRKHVQSHHSNSNFKCSRCNEKFKLDANRISHEYKEHNIKSFKCYKCDETFGSHYLRRLHLHSTHMKMEFTCKECSKTFLNKSLLNRHVNRVHLKEKNFTCPVCGDKFFDLGSLNAHAKRHLDSSQKSFQCKICFLVFGGKMELNDHMVTHAGQSLSLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -