Basic Information

Insect: Cydia amplana
Gene Symbol: -
Assembly: GCA_948474715.1
Location: OX419679.1:6533435-6536422[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.0086 0.46 11.5 2.0 1 23 68 91 68 91 0.97

2 21 2.3 1.2e+02 3.9 0.5 2 23 119 141 118 141 0.93

3 21 0.00052 0.028 15.3 0.2 1 23 163 186 163 186 0.94

4 21 8e-06 0.00043 21.0 0.8 3 23 193 214 192 214 0.95

5 21 0.0049 0.27 12.3 0.3 1 23 220 243 220 243 0.95

6 21 0.00011 0.0058 17.5 0.1 3 23 250 271 249 271 0.97

7 21 0.00022 0.012 16.5 4.3 1 23 275 298 275 298 0.97

8 21 0.069 3.7 8.7 0.2 2 23 305 326 304 326 0.96

9 21 0.0032 0.17 12.9 2.2 1 23 375 397 375 397 0.96

10 21 0.0058 0.31 12.0 0.5 1 23 467 490 467 490 0.97

11 21 0.00037 0.02 15.8 0.4 1 23 495 518 495 518 0.94

12 21 0.00017 0.0091 16.9 2.2 1 23 523 546 523 546 0.98

13 21 0.00012 0.0063 17.4 1.9 2 23 549 571 549 571 0.96

14 21 0.0035 0.19 12.7 1.5 1 23 654 677 654 677 0.97

15 21 0.006 0.32 12.0 0.4 2 23 750 773 749 773 0.94

16 21 7.6e-05 0.0041 18.0 0.3 3 23 780 801 779 801 0.94

17 21 0.003 0.16 13.0 3.6 2 23 806 828 805 828 0.93

18 21 0.00072 0.039 14.9 3.4 1 23 833 856 833 856 0.98

19 21 7.1e-06 0.00038 21.2 5.0 1 23 860 883 860 883 0.97

20 21 0.00051 0.028 15.4 0.3 2 23 890 911 889 911 0.96

21 21 1.4e-05 0.00077 20.3 0.4 1 23 917 939 917 939 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.0086	0.46	11.5	2.0	1	23	68	91	68	91	0.97
2	21	2.3	1.2e+02	3.9	0.5	2	23	119	141	118	141	0.93
3	21	0.00052	0.028	15.3	0.2	1	23	163	186	163	186	0.94
4	21	8e-06	0.00043	21.0	0.8	3	23	193	214	192	214	0.95
5	21	0.0049	0.27	12.3	0.3	1	23	220	243	220	243	0.95
6	21	0.00011	0.0058	17.5	0.1	3	23	250	271	249	271	0.97
7	21	0.00022	0.012	16.5	4.3	1	23	275	298	275	298	0.97
8	21	0.069	3.7	8.7	0.2	2	23	305	326	304	326	0.96
9	21	0.0032	0.17	12.9	2.2	1	23	375	397	375	397	0.96
10	21	0.0058	0.31	12.0	0.5	1	23	467	490	467	490	0.97
11	21	0.00037	0.02	15.8	0.4	1	23	495	518	495	518	0.94
12	21	0.00017	0.0091	16.9	2.2	1	23	523	546	523	546	0.98
13	21	0.00012	0.0063	17.4	1.9	2	23	549	571	549	571	0.96
14	21	0.0035	0.19	12.7	1.5	1	23	654	677	654	677	0.97
15	21	0.006	0.32	12.0	0.4	2	23	750	773	749	773	0.94
16	21	7.6e-05	0.0041	18.0	0.3	3	23	780	801	779	801	0.94
17	21	0.003	0.16	13.0	3.6	2	23	806	828	805	828	0.93
18	21	0.00072	0.039	14.9	3.4	1	23	833	856	833	856	0.98
19	21	7.1e-06	0.00038	21.2	5.0	1	23	860	883	860	883	0.97
20	21	0.00051	0.028	15.4	0.3	2	23	890	911	889	911	0.96
21	21	1.4e-05	0.00077	20.3	0.4	1	23	917	939	917	939	0.98

Sequence Information

Coding Sequence: ATGAATACCAAACAGGGTTTCTTGCGTCACGCGGCCGGCTGCACTTCCGCGAAAGACGAATCCAAATCGCATCATATCATCGACGAAATCGTGTCCATCGACGATACAGAAAGGAGGCCCAATGTTAAACAGATTAGGAACAACATCGCTTGTATCCTCAACATGTCCACAGCGATACCGTTCAAATATTTCATGAATAAATTCAGATGTTTCTATTGCTCCAGAGATTTCATAGAATGCGACGAACTCAAAGAACATACTATGATCGAGCATCCCCATTGCGATTCCAAGTTTAAATCCATGAAATTACGAAATAGAGAGGACATTTCGATTAAAATAGACATATCATCTTTATCTTGTAAGATGTGCTTTGAACCTATGAACGATTTGAACCATTTGATAGACCACCTAACCTCGGAACATAAGGCGCGTTTTGACAAGTCTATAGAAATGAATATTCAACCGTTCAGACTTATAAAGGACAATTTTGCCTGCCCTTTTTGCGGAAAAGTATTAAGGTACTTTAGCACTCTGCTAAGGCACGTTAGTATCGCCCATACGGATAATAAAAATATATGCATGTACTGCGGAAAGTCCTTTAGGACGAAACCAAATTTACGGGCGCACGTCACGCGACGTCACAAGGTAGGCAAGATGTACAATTGTGACGCTTGCAAACTAGAGTTTACAAGAACGGTAGATCTCCGTTCGCACATGGGCAGGGTCCATGGCGACAAGACAGTCGACTGTCCCGAGTGCCCGGAGAAATTCGTGTCGCAATACGCGATGCAACGGCATCTAATTACGATACACGGATCCGGCCACAAGTGCTCTTACTGCGGAAAATTATTCACCAGAAACTCCTTCATGGACAACCATATCAGGCGTACGCATCTCAAAGAGAAAAACGTGCAGTGTTTGCTCTGCAACGACAGATTTTTCGATGCTGCGCTCCttaaaagccatatggtgaaacatataggggagagaaatttccactgcgatgtatgCGATGAATATCCGCACCGCCCGTACGACAGCTGTACCTCTCAGCGGCGGAGGAAAAATTTACAAATATTATTCAATAACACCTCCGTGATGCCTTTCAAATGGCGGGGCACGTACCTATGTTTCTACTGCGGGAAAAACTATACAGAGTATCCGGAGTTCAGAAAGCACACAAAGTCACACGGGCTCTGCTCTACGAACGATTATTCCCTTAAAATTATTAAAGGAAACCATATAGAGATTAAAATCGACGTCTCAGATATCGTTTGCGAGATTTGTTGCGACCCCTTTAACAGTTTTGACGAAGTCGTCGAACATTTGAACTCGAAACATGATCTGAGATACGACACCAGCGTACAAATCCCGTTTCAGTTATACAGACTGTCAGATTTCCGATGTTTACTATGTGATGAGCAGTTTAACTACTTCGGATACTTGGTAAAGCATGTGAACAGCGTTCACCCACAAAATTGCTTCATATGCGATGACTGTGGACTTACTTTCAATAAGAAAAGAGATCTCGCTCTGCATTCGAGAGATAACCATCGTCAGGGAGGGTACCCGTGTGACCAATGCACCAGCAATTTCAAAACGAAAGGCATGTTGCGGAAACACCAAAACACATTCCATTTCAGAAAATGCAAAGACTGCTCGTTAACGTTCGCGTCTCATAGCCTACTACAGAAACACATACAGTTAGACCATCCAGACGATGGCAGTTTGAAGTGTATTTATTGCGCGAAGGAGCTGCATTCTAAGCAGGGTCTCAAACAGCATCTTAATAAATGCGAAGTAAGATTACTTTCTCAAATCGATGCTCCTCTGCCTAGTAACGCTTTTGAAGAGTCTTACATCGAGCCCAGAAAGAAACAGAACATATTACAAATTAGGGAAAATATCCAATGCGTACTCAACATGTCTACCGCTATACCTTTCAAATTCTTTTCAAAGTATTCGTGTTTTTACTGCTCTAAAAAGTTTGTCGAATTTGAAGAACTTAAAGAACATACTTTAAGGGAACACCCGATTTGCGACGTCAAATCTAAGTGCATGAAGAAATGCAAAGGTGAAAGGATAAATGTTAAGGTGGATGTCGCCAATTTAGCCTGCAAAATATGCTGTCAGCCTATCGACGACTTGGACATATTAATAGACCATCTCATAGCTGACCATAAAGCTAATTACGACAAGTCTCTAAAACGTTGCTTCGAACCTTTCCGAATAATCAAAGACAATATGCCATGTCCCCTATGTTCCGATAAGACTTTTAGATATTTCAGCACCCTTCTAAGACATATCAACTCCGAACACAGCAACAATAACAGAATCTGCGATTTCTGTGGGCGTAGTTTTAAAAATGTCACCAATCTCAAAGTTCACATCACTTACGCTCATACCGGGTCATGCGAATGTGACGTATGTGGGCTTAAATTTAAAAACCAATGGTGTCTCGCGCGACATAAGGCTAAAACCCACAACGCGAAAGACTACAAGTGTCCTAAATGCCCCGAACAATTCCAATCTCAGTACCACAAGCAGAAACACCTAATAACAACCCACGACATCGGTCACAAGTGTTCCTACTGCGGCAAAATGTTCACAAGGAACTCCTTTATGAAGGATCATATCCGTAGAACGCATTTGAAGGAGAAAAACGTGCCTTGTTCCGTTTGTAACGAAAAGTTCTTCGATAACTATCTCCTTCGCATgcacatggtaaagcatgagggagagagaaagttcagctgcgaagtttgtggtaaggcgttcctcaggcgaagcaatctcagctctcacatggacatgcacaaAAAATACGGCCATGTTCAAGTTTAG
Protein Sequence: MNTKQGFLRHAAGCTSAKDESKSHHIIDEIVSIDDTERRPNVKQIRNNIACILNMSTAIPFKYFMNKFRCFYCSRDFIECDELKEHTMIEHPHCDSKFKSMKLRNREDISIKIDISSLSCKMCFEPMNDLNHLIDHLTSEHKARFDKSIEMNIQPFRLIKDNFACPFCGKVLRYFSTLLRHVSIAHTDNKNICMYCGKSFRTKPNLRAHVTRRHKVGKMYNCDACKLEFTRTVDLRSHMGRVHGDKTVDCPECPEKFVSQYAMQRHLITIHGSGHKCSYCGKLFTRNSFMDNHIRRTHLKEKNVQCLLCNDRFFDAALLKSHMVKHIGERNFHCDVCDEYPHRPYDSCTSQRRRKNLQILFNNTSVMPFKWRGTYLCFYCGKNYTEYPEFRKHTKSHGLCSTNDYSLKIIKGNHIEIKIDVSDIVCEICCDPFNSFDEVVEHLNSKHDLRYDTSVQIPFQLYRLSDFRCLLCDEQFNYFGYLVKHVNSVHPQNCFICDDCGLTFNKKRDLALHSRDNHRQGGYPCDQCTSNFKTKGMLRKHQNTFHFRKCKDCSLTFASHSLLQKHIQLDHPDDGSLKCIYCAKELHSKQGLKQHLNKCEVRLLSQIDAPLPSNAFEESYIEPRKKQNILQIRENIQCVLNMSTAIPFKFFSKYSCFYCSKKFVEFEELKEHTLREHPICDVKSKCMKKCKGERINVKVDVANLACKICCQPIDDLDILIDHLIADHKANYDKSLKRCFEPFRIIKDNMPCPLCSDKTFRYFSTLLRHINSEHSNNNRICDFCGRSFKNVTNLKVHITYAHTGSCECDVCGLKFKNQWCLARHKAKTHNAKDYKCPKCPEQFQSQYHKQKHLITTHDIGHKCSYCGKMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLRMHMVKHEGERKFSCEVCGKAFLRRSNLSSHMDMHKKYGHVQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -