Camp000436.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419680.1:472607-485841[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0011 0.061 14.3 0.7 1 23 294 316 294 316 0.98 2 26 0.17 9.3 7.4 5.1 1 23 323 345 323 345 0.96 3 26 0.27 15 6.8 1.7 1 23 349 371 349 371 0.97 4 26 0.0072 0.39 11.7 1.3 1 23 376 399 376 399 0.96 5 26 0.35 19 6.4 0.6 1 23 404 427 404 427 0.95 6 26 0.071 3.8 8.6 0.1 2 21 436 455 435 459 0.91 7 26 9.9 5.3e+02 1.9 0.0 3 23 467 488 466 488 0.94 8 26 0.00014 0.0077 17.1 3.8 1 23 490 513 490 513 0.96 9 26 0.13 7 7.8 0.0 2 20 546 564 545 566 0.94 10 26 0.002 0.11 13.5 1.1 1 23 577 599 577 599 0.96 11 26 0.00066 0.036 15.0 1.1 1 21 605 625 605 626 0.94 12 26 0.00066 0.036 15.0 1.1 1 21 654 674 654 675 0.94 13 26 0.00066 0.036 15.0 1.1 1 21 703 723 703 724 0.94 14 26 0.00066 0.036 15.0 1.1 1 21 752 772 752 773 0.94 15 26 0.00066 0.036 15.0 1.1 1 21 801 821 801 822 0.94 16 26 0.00066 0.036 15.0 1.1 1 21 850 870 850 871 0.94 17 26 0.00066 0.036 15.0 1.1 1 21 899 919 899 920 0.94 18 26 0.00066 0.036 15.0 1.1 1 21 948 968 948 969 0.94 19 26 0.00066 0.036 15.0 1.1 1 21 997 1017 997 1018 0.94 20 26 0.00066 0.036 15.0 1.1 1 21 1046 1066 1046 1067 0.94 21 26 0.00066 0.036 15.0 1.1 1 21 1095 1115 1095 1116 0.94 22 26 0.00066 0.036 15.0 1.1 1 21 1144 1164 1144 1165 0.94 23 26 0.00066 0.036 15.0 1.1 1 21 1193 1213 1193 1214 0.94 24 26 0.00066 0.036 15.0 1.1 1 21 1242 1262 1242 1263 0.94 25 26 0.00066 0.036 15.0 1.1 1 21 1291 1311 1291 1312 0.94 26 26 0.0006 0.032 15.1 0.4 2 23 1338 1360 1337 1360 0.97
Sequence Information
- Coding Sequence
- ATGGATAACAGTTCAAGAGTACAATTGGTGTCTGAGGATTTGAGCGCTTGCCGCGTCTGTTTGGTCACTAACACTAGGCTTTATAGCATTCCTGATGGGCTTGAAGAGAATTTTATACAGCTAATGGGTGTGGAATACTCGGACGATGATGGGTTGCCGCAGCACTTGTGTCCGTGTTGCCGGGCGCAGCTCCTGAGGTTTGCTGATCTCCGCGCCCGCTGCCAACGCTCACAGGCCCTGCTGAGGGAGATGCTGAAACAGCTGACCTTTCTTTCTACAGACGACATACTCTCAATAGACAGAAATTATCACAAACTTGCCCTAAACTTGGTAACACTTAGCGTTTACTCATTCAGCTCACTTGAAAAAAAGACTAACAGAAAACCTAAAGAAATTTGCGAAGACTCATTCAATGACAGGGATGAACTGCCTGAAACTGAAATAGAAATTAAAGACGAACCCACAGATCCTTTGAATAACGTTGCAAATAATATTGAAGAGACAGTTAACCTGAGTAATAGTCTAGAATCGCCTAAACAATTAGTTGTAGAAATAGATGGTTTAAACATAGGTCGAATCTCCGTAAAAAACTTAGAAACAGTGAAAGAAACCAAAAAGAAATCTAAAAAGGAGGATAAAGATGTGAAAACCAAAAGGATATCAAACCTGCTTCGTTTTGTGGCCGGGAAAAAGAGAAATGCCAAGCCGTTGACAAAATGGCAACTACAACTGCGAAGAGCAGAAAATAATTTCTTGCCGAACTTCGATCACGCTGAGTTTGAGTCGAAGCATGATTGTAAGCTGAAGATACTGACGATGGAAGAGCAGCTTCAGGAGATAGAGGAGCGGAAACAGAGCAGTAATTATTTGAATCTTGATTATAAGTGCGAGCAGTGTGGGCGGGGGTTTGAGTTTGAGCAGCCTTTTAAGAATCATATGGCCAAGCATGACCCGAATATCGGTCCGTTCGAGTGCGACGTGTGCCACATATACTTCCGCACGCAGTACCTGCGGCACCGCCACCTCGACTACCACAAGATGATGTTCAGTTGCAACCTGTGCGGGTTCGTGACGCGCGCCAAACATTTGGCGCGAAACCACTATCTCATGCACACTGGAAAGGTGTTCGAATGCAAGCAATGTGACGCCACTTTCACGAAAAGCACCTCGTACTACGGGCACGTGCGCCTTAACCACCCTTCCAAAGACCACGTGTGCGGGATCTGCGGGGACTCTTTCATCGGAGCCCTGGGGCTGCGGCATCACCACGCGAAGGCACACAAAGAGTTGTCGAAGTCTAAGTTGTCGTGCGAGTCGTGCGGGGTGCAGTTCGCGAGCTCCGAGGCCATGAGCAGACACATGGACGGACGGACACACTGCGACGCGTCTTTAAAAGCGTGCGCGGAGTGCGGCGCGCTGCTCGACACGGGGGAGGCGCTCGCCGCGCATGCGCGCACGCAGCACGAGTTCTGCTGCGAGGAGTGCGACCAATCGTTCGTGAGCCGCAGCTCGCTGGAGACGCACCACCAGCGCATCCACCTGCGCGTCAAGTGGCCGGCATACGGCCGCACGAGGGAGATGAACAAGGAATACTACAGGAAGATAAAAGAGAGGACGCGACTTCGAGCGCAGGTCGTCTGTGAAATATGCGGAGCGAAACTCATGTCTAACGCGGCCCTGGAGAGGCACCAACTCGGGCAGTGCAAGCGAGAGAAAAGCAGCAAGTCGTACAAGTGTCCCTCCTGTGACAAGATGTGCGCCACGAGGCAGGGGCTGCAGCTGCATGTGACGCTACACACGGGGGAGAAGCCGCACAAATGCTCGCAGTGTCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTAAGAACAGACAGACAGACCGGCACTACGCGTATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAATGCTCGCAGTGTCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTAAGAACAGACAGACAGACCGGCACTACGCGTATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAATGCTCGCAGTGTCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTAAGAACAGACAGACAGACCGGCACTACGCGTATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAATGCTCGCAGTGTCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTAAGAACAGACAGACAGACCGGCACTACGCGTATAGTCTATATACAGCTGCACGTGACGCTACACACGGGAGAGAAACCGCACAAATGCTCGCAGTGTCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTAAGAACAGACAGACAGACCGGCACTACGTGTATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAATGCTCGCAGTGTCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTAAGAACAGACAGACAGACCGGCACTACGTGTATAGTCTATATACAGCTGCATGTGACGCTACACACGGGGGAGAAGCCGCACAAATGCTCGCAGTGTCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTAAGAACAGACAGACAGACCGGCACTACGCGTATAGTCTATATACAGCTGCACGTGACGCTACACACGGGAGAGAAACCGCACAAATGCTCGCAGTGTCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTAAGAACAGACAGACAGACCGGCACTACGTGTATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAATGCTCGCAGTGCCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTAAGAACAGACAGACAGACCGGCACTACGTGTATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCATAAATGCTCGCAGTGTCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTAAGAACAGACAGACAGACCGGCACTACGTGTATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAATGCTCGCAGTGCCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTAAGAACAGACAGACAGACCGGCACTACGTGTATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCATAAATGCTCGCAGTGTCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTAAGAACAGACAGACAGACCGGCACTACGTGTATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCATAAATGCTCGCAGTGTCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTAAGAACAGACAGACAGACCGGCACTACGCGTATAGTCTATATACAGCTGCACGTGACGCTACACACGGAAGAGAAGCCGCACAAATGCTCGCAGTGTCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGTAAGAACAGACAGACAGACCGGCACTACGCGTATAGTCTATATACAGCTGCACGTGACGCTACACACGGGGGAGAAGCCGCACAAATGCTCGCAGTGTCCGCAGCAGTTCAGGCAGGCGGGCGCGCTCAAGCGGCACCACGCGACGGCAAGAACAGACAGACAGACCGGCACTACGTGTAGTAGAATAACTGCTGTGCACCTGGGCATCGACACGCGCGTGCAGTGCGCGCAGTGCGGCAAGTATTTCTCGACGCCGTCTACTCGCAAACTGCACGTGAACACGGTGCATCTGCGCCTGCCGCCGCCCAAGCGACGGCGGCAGAAGGAATAA
- Protein Sequence
- MDNSSRVQLVSEDLSACRVCLVTNTRLYSIPDGLEENFIQLMGVEYSDDDGLPQHLCPCCRAQLLRFADLRARCQRSQALLREMLKQLTFLSTDDILSIDRNYHKLALNLVTLSVYSFSSLEKKTNRKPKEICEDSFNDRDELPETEIEIKDEPTDPLNNVANNIEETVNLSNSLESPKQLVVEIDGLNIGRISVKNLETVKETKKKSKKEDKDVKTKRISNLLRFVAGKKRNAKPLTKWQLQLRRAENNFLPNFDHAEFESKHDCKLKILTMEEQLQEIEERKQSSNYLNLDYKCEQCGRGFEFEQPFKNHMAKHDPNIGPFECDVCHIYFRTQYLRHRHLDYHKMMFSCNLCGFVTRAKHLARNHYLMHTGKVFECKQCDATFTKSTSYYGHVRLNHPSKDHVCGICGDSFIGALGLRHHHAKAHKELSKSKLSCESCGVQFASSEAMSRHMDGRTHCDASLKACAECGALLDTGEALAAHARTQHEFCCEECDQSFVSRSSLETHHQRIHLRVKWPAYGRTREMNKEYYRKIKERTRLRAQVVCEICGAKLMSNAALERHQLGQCKREKSSKSYKCPSCDKMCATRQGLQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTDRQTGTTRIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTDRQTGTTRIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTDRQTGTTRIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTDRQTGTTRIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTDRQTGTTCIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTDRQTGTTCIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTDRQTGTTRIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTDRQTGTTCIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTDRQTGTTCIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTDRQTGTTCIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTDRQTGTTCIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTDRQTGTTCIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATVRTDRQTGTTRIVYIQLHVTLHTEEKPHKCSQCPQQFRQAGALKRHHATVRTDRQTGTTRIVYIQLHVTLHTGEKPHKCSQCPQQFRQAGALKRHHATARTDRQTGTTCSRITAVHLGIDTRVQCAQCGKYFSTPSTRKLHVNTVHLRLPPPKRRRQKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -