Camp003081.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419656.1:3300677-3323564[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 3.5e-05 0.046 14.2 0.0 8 43 142 177 138 178 0.89 2 6 2.2e-12 2.9e-09 37.3 2.9 3 44 266 306 264 306 0.96 3 6 5e-11 6.6e-08 32.9 3.3 3 44 362 402 360 410 0.94 4 6 4.3e-11 5.8e-08 33.1 2.7 3 44 414 454 412 454 0.94 5 6 7.7e-11 1e-07 32.3 2.6 3 44 518 558 516 558 0.94 6 6 0.027 36 5.0 2.1 3 43 571 613 569 614 0.82
Sequence Information
- Coding Sequence
- ATGAAAACGCGTAGGCGAACTTTTACTTCGATTCCTGAAGAAAGTGAAAATGAACAGCTGTCCGATGATGATGATGATGACTATAAATTACCTTCTAGAACTGAAATCGAAGTTGAAGACCCCGATTATGAACTTACTGATGAAGATGAAAATGCTTTTGAAGGCGAAGATTTGGTGCAATGCGTCCCCACAAGGAAAGGTCATCAGATTCTCTATAAAGGTTACACTTACGTGTTCAAGAGTAGACTGCAGTGCGGGGCAGAGCAGTGGTGCTGCTCGTACCGACAGAAAACAGGTTGTATATCCGTGATAAACATGCAAGTGTGCGGTGTTGAAGTTGTCCGAGATTTCCACAACCATAAGAAGCCTATGTTCTCCGATGCAATGCAGAATCCAGAAGAACTGCCAGAATGGGTGTCAATATATTTTCTGAAGAAGGATGACAATACCCAACGATGCAACATATGCGAGAATGTGGTCCAAGCTTCAGAGAAGTCCCTAGATCTCCTAGGTCATTTAAAAACAAGTCATGCAGAAGTCATAGAGTTACACAAGAACCCGGATTCGACGGTGGGGTTTCGCATCGAGTTCCTTCAATTGAATGTTCTCAATGAAGATGGTGCGGAGAAAACACAGCCGGTGCTCTTGGGCGAGGTCTGCGAAGGGCCTACGGAGGAGGTTGTCAGCGAAAAGACCATCGCCCAGACGGACTGTGAGCTGTCTAATGTTCAGTATGTTCTGATTCCGAGGAAAAGGAAATACAAACGGGAACATGAGACTCGGAAACGCAGCTGGGTGTGGAAATACTTCGACAAGCTGAGCACCATCATCTTCCGGTGCAACATATGCAATGTCGTGCTGTCTATCAAGGGCTGCAACACCAACAATATGAACCGCCACGTCCGCACTCGCCACCCGAACGTCTACCAAGTCGAAGTGGGGGGCAAGGGTGAGGCGGACTCTATCCTGGACCTTCAGGAAGTGGAGACACCCTATGCTGTGAAAACAGAGGAAATAACCGACAAGGACTATGATGATCGGAGCGTTGTAGAGAGCCCCGACAAGAAGGCCCACCGAAGCTGGGTGTGGTCCTACTTCAAGAAGCTGAGCGGAACCCAGGCCCAGTGCAAGCTGTGCAACCGGAACATCTCCCACGGCGGCAACGCCACCGGCAACATGAACAGACACATCAAGATGATACACAAGGAGGTGTACACCAAGAAGGCCCACCGAAGCTGGGTGTGGTCCTACTTCAAGAAGCTGAGCGGAACCCAGGTCCAATGCAAGCTGTGCAACCGGAACATTTCCCACGGCGGCAACGCCACCGGCAACATGAACAGACACATCAAGATGATACACAAGGAGGTGTACACCAAGGTTGCAGAAGGCCCACCGAAGCTGGGTATGGTCCTACTTCAAGAAGCTGAGCGGAACCCAGGTCCAATGCAAGCTGTGCAACCGGAACATTTCCCACGGCGGCAACGCCACCGGCAACATGAACAGACACATCAAGATGATACACAAGGAGGTGTACACCAAGGTTGCAGCTGGGCGTGGTCCTACTTCAAGAAGCTGAGCGGAACACAGGCGCAATGCAAGCTGTGCAACCGGAACATCTCCCACGGCGGCAACGCCACCGGCAACATGAACAGACACATCAAGATGATACACAAGGAGGTGTACACCAAGGTTGCAGACGAAAACAGCTGGGTGTGGAAAGTTTTCGAAAGCGACGAAGACGACTTCTACTCCTGCAAGATCTGCCAGTTCAAGTGCAACAAATACGCCAACATAGACAAGTCTGTGCTCTGCATACTCAAGCATCTGAAAGCGGACCACGGGGTGGTGTCTGGCGACCAGATTATCACTAGTGTGGACTGTGACACCGAGCCGCATTGA
- Protein Sequence
- MKTRRRTFTSIPEESENEQLSDDDDDDYKLPSRTEIEVEDPDYELTDEDENAFEGEDLVQCVPTRKGHQILYKGYTYVFKSRLQCGAEQWCCSYRQKTGCISVINMQVCGVEVVRDFHNHKKPMFSDAMQNPEELPEWVSIYFLKKDDNTQRCNICENVVQASEKSLDLLGHLKTSHAEVIELHKNPDSTVGFRIEFLQLNVLNEDGAEKTQPVLLGEVCEGPTEEVVSEKTIAQTDCELSNVQYVLIPRKRKYKREHETRKRSWVWKYFDKLSTIIFRCNICNVVLSIKGCNTNNMNRHVRTRHPNVYQVEVGGKGEADSILDLQEVETPYAVKTEEITDKDYDDRSVVESPDKKAHRSWVWSYFKKLSGTQAQCKLCNRNISHGGNATGNMNRHIKMIHKEVYTKKAHRSWVWSYFKKLSGTQVQCKLCNRNISHGGNATGNMNRHIKMIHKEVYTKVAEGPPKLGMVLLQEAERNPGPMQAVQPEHFPRRQRHRQHEQTHQDDTQGGVHQGCSWAWSYFKKLSGTQAQCKLCNRNISHGGNATGNMNRHIKMIHKEVYTKVADENSWVWKVFESDEDDFYSCKICQFKCNKYANIDKSVLCILKHLKADHGVVSGDQIITSVDCDTEPH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -