Camp003751.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419656.1:16428808-16429503[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00015 0.14 12.4 0.3 2 24 10 33 9 34 0.92 2 2 0.00027 0.25 11.6 0.1 2 24 81 104 80 105 0.92
Sequence Information
- Coding Sequence
- ATGTACATCGGGCTCGTGGGAGGCGTTCGCACGGAGATGGCAGCGGCGGCCAACACGGTGCTGCGCGCCTACTACATGTCGCAGCGACGCGCCGCCACGCGGGACACCGCGCGCACCACCGTGCGCATGCTCGACAGCCTCGTCAGCGACGCGCCGCCACGCGGGACCCCGCGCGCACCACCGTGCGCATGCTCGACAGCCTCGTCAGCACTGATGTACATCGGGCTCGTGGGAGGCGTTCGCACGGAGATGACAGCGGCGGCCAACACGGTGCTGCGCGCCTACTACATGTCGCAGCGACGCGCCGCCACGCGGGACCCCGCGCGCACCACCGTGCGCATGCTCGACAGCAGGCgcggcccgccgtaa
- Protein Sequence
- MYIGLVGGVRTEMAAAANTVLRAYYMSQRRAATRDTARTTVRMLDSLVSDAPPRGTPRAPPCACSTASSALMYIGLVGGVRTEMTAAANTVLRAYYMSQRRAATRDPARTTVRMLDSRRGPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -