Basic Information

Insect: Cydia amplana
Gene Symbol: clz9
Assembly: GCA_948474715.1
Location: OX419669.1:7104849-7107485[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 3e-08 2.8e-05 24.2 0.0 7 37 26 55 21 61 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	3e-08	2.8e-05	24.2	0.0	7	37	26	55	21	61	0.89

Sequence Information

Coding Sequence: ATGAGTGAGAAGGTGTCAAGCAGGAAGAAAGAAGTAAAAAAAAAATTATTTCAGTACTCACCCCACAAAGTCGGCTTGGCGTTAGAAGCAATTAGAAATGGCATGAAGGTTTCTACTGCCAGCAAAAACTATAATGTACCTCGAACAACCTTGAGACATAAGCTTTCTGGACATGCACCTGAAACTTCTGGACATGTAGGACCTCAAGCAGTTCTTGGCGAGCAAATTGAAACTGATCTCGTTGCATGGATCAAAGAGTGTGCTCGTCTTGGGTTTCCAATCGATAAAGAAGGACTATTGGACTCTGTGAAAAAAATTGTGGTAAAAGGAAATCTAATAACACCTTTTACAAATAATAGGCCTTCCAGGTCATGGTATGAGGGATTCATGAGTAGACACCCTGATTTGAGTCAAAAACACGCCGAGTATATAAATAAAGCTCGAGCGTTAATTACTGAAGAAAAAATTAGAAACTGGTACCAAGAAGTTTCTACACTGTTGGGTTCAGAAAACCTGAAAATTTTAGAAGATCCGACGCGAGTGTGGAATTGCGATGAAACTTCTTTTTTTCTTGCACCAAAAGGAGCTTTAGTGCTAGCTGAGAAAGGAAAACATGTCTATGACACGTCAAATAACAGTGACAAAGAAAATATCACAACTCTGTTTACAGTCAATGCAGTTGGTGAGTATGCACCTCCACTGACAGTTTATAAATACAAACGGATGAACAGTGAAGTAGTACAAAATGCACCAGAGGGATGGGGACTGGGCAAAACCGACAAGGGTTGGATGACAGGAGAGGCATTCTATGAATACATTGGAAATGTATTTATTCCTTACCTCAAAGAGAAAGAAATAGCTTTACCTGTCATCTTGTTTTTAGATGGGCATAAGTCACATCTTACAATGCATCTGAGTACATTATGTCGTGAAAATGGAATCATCGTCGTGGCACTCGTCCCAAATACAACACATATGATGCAGCCGCTGGATGTTGCGGTTTTTTTCCCCTTAAAACAAAAATGGCGTAAACTTGTGAAGAAATGGCGAATTGAAAATGATGGAAAAGATATCACCAAATTTAACCTTCCTACAGCTCTTCACAGTTTACTAGTCAATAATGAAGCTTTTGCAAACAATGTAAGAGCGGGATTTAGTACCTGTGGGCTGTATCCATTTGGTGCTGACTTTGTGAATTACAAGAGAGTTGTTCAATCAACCAGCAACACTAACGTTAAATATGACGCTGTACCGAAGTCTGTCATTTCTGAGTCAAGCTATCTTACATACCTTGAAAGTAAAATAGACCCTAGCTTGCTAAAGGACTTTTACTTAACGTGTGAATCGGGCACTGACTGGGAAGGCAAAAAGGAGGCAATAATGCTTTATGATACTTGGCTGGCTTTCAAAAATGATACTACTAACCATGCAGTTGCAGCTGTATCTAAAGACATCGATGATTCCCCTCTTTTTGACCTTTGCGGCATAAATGATATAGCTAACGAGATGCATACGCCTAACAAAGAAATCTCAGCAAAAGATCCATCAACCAACAACGCAGTTCAGTCCAATGGCATAGAAAATCCAGGCCTACCTGCGTCGTTTCTTATAAATGGCGACAAAAACAATTCCGACACAGAGCTATCCCTTAATCCCGCCCACCCATCTGCCTCAGTTTTTACTGCCTTAAACAAAAATGATGTCACGCGACAAATGGATACGCCAAAAAATTACAATAATATCAATGAGCCGTCAACTAGTCATGAAGCTTTATCTAAAGATATTGAAGATTGCCTACCAACATCCTTTCTTGAAACCGATGAAAAAGATGGCTTCGCTCGACAAATGCATACGCCAAACAAGAATAATTCCAATACAGCCTCATCATCTCCCGATGCTACCTCCAATGTTGTTGAAAGTGTTGCAACCCCCAACTGTACGGAACAGGCCGGTTCCACCAAAGAGTCTACCAAAGATAAAATAGTAAGTAACCTTGTCAGGGATTGCGTTTTATGGCCAGAGAAAATAATCCCTAAGAGCACAAAAAAAGCAAAATATATTCCTTCGGTACTTACTTCCGACAAATGGATGGAGATTATGCAATCAACTGAAAAAGAAAAGAAAAATAAAGAGCCAAATCCAAAAATCGGTAACAAACGAGCAAAATCGTTAAAGAAAGGGCCTTGTGTCGAGTCTAAAGCCAAGAAATTGAAAACAATAGCTAAACATTCTAAGATTAGTGTAAAGAAAAAAAATACATATAGATCTGATTCAGAAGAATCTAGCGAAAAATGTGACAATTTTTCTGTCCATGATACAGATGACTCTATAGGTGAAGACGTAAGCAATGACTGCGATGATCAAGAAAATAAAAATATTTATAAAATTGGGGACTTTGTAATACTTGTTTATGAAGGAGAATATTTTGTAGGGCAGATACAGTTCTTAAATGAAGAAGAGGTACAAATAAAGTCCATGCAAAAAACTGCGAAGAATTGGAAATGGCCAGACAGAGTTGATTTAAATTTTTATCCTTACGATGACATCAAACAGAAAATCGCTACACCAAAAAAAGTTTCGAAGAGAGATGTATATCGTGTTCCAGAAATTGAAAAGTATTGGGAGTTTTCTACTTAA
Protein Sequence: MSEKVSSRKKEVKKKLFQYSPHKVGLALEAIRNGMKVSTASKNYNVPRTTLRHKLSGHAPETSGHVGPQAVLGEQIETDLVAWIKECARLGFPIDKEGLLDSVKKIVVKGNLITPFTNNRPSRSWYEGFMSRHPDLSQKHAEYINKARALITEEKIRNWYQEVSTLLGSENLKILEDPTRVWNCDETSFFLAPKGALVLAEKGKHVYDTSNNSDKENITTLFTVNAVGEYAPPLTVYKYKRMNSEVVQNAPEGWGLGKTDKGWMTGEAFYEYIGNVFIPYLKEKEIALPVILFLDGHKSHLTMHLSTLCRENGIIVVALVPNTTHMMQPLDVAVFFPLKQKWRKLVKKWRIENDGKDITKFNLPTALHSLLVNNEAFANNVRAGFSTCGLYPFGADFVNYKRVVQSTSNTNVKYDAVPKSVISESSYLTYLESKIDPSLLKDFYLTCESGTDWEGKKEAIMLYDTWLAFKNDTTNHAVAAVSKDIDDSPLFDLCGINDIANEMHTPNKEISAKDPSTNNAVQSNGIENPGLPASFLINGDKNNSDTELSLNPAHPSASVFTALNKNDVTRQMDTPKNYNNINEPSTSHEALSKDIEDCLPTSFLETDEKDGFARQMHTPNKNNSNTASSSPDATSNVVESVATPNCTEQAGSTKESTKDKIVSNLVRDCVLWPEKIIPKSTKKAKYIPSVLTSDKWMEIMQSTEKEKKNKEPNPKIGNKRAKSLKKGPCVESKAKKLKTIAKHSKISVKKKNTYRSDSEESSEKCDNFSVHDTDDSIGEDVSNDCDDQENKNIYKIGDFVILVYEGEYFVGQIQFLNEEEVQIKSMQKTAKNWKWPDRVDLNFYPYDDIKQKIATPKKVSKRDVYRVPEIEKYWEFST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00409225;
90% Identity: iTF_00409225;
80% Identity: -