Camp018959.2
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419654.1:19863552-19865786[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-11 4.9e-08 33.0 0.0 1 41 7 48 7 50 0.94 2 2 5.6 5.2e+03 -2.3 0.0 7 18 641 653 641 654 0.86
Sequence Information
- Coding Sequence
- atgccgtataaaaactatACCAACGAAAATCTAAACCATGCTTTAGAATCAGTAAGGAATGAGGAAATGACGGCTTACAAAGCTTCAAAGTTGTATAAGGTGCCTTATCAAACTTTACTGGACAAATTGAAAAATAAACATACAAATCCTTCTGGGCATGCGAGAGTTCTCACGGAAGAGgaagaaaaactaatagtcaaatggattcaccacatggcagagattgggtttcccgtcacaaaggagcaattattgcacactgttggtaaattagttaaacaactgaataggcctaatccgtttaaagatggagttccaggaagacactggtatgaagcattctttaagagaaacccagaggtgagttcaagggtatctcaggccttaactacagcacgaatcggcgcaacagaagaaaaaatacgacactggttcgatagagtttataagtacttggaagagaatgactatctggatattctgcaagatccgtctcgaatttttaattgtgacgagtcagcttttttcttgtgctttaagggtcaagctgtgttagcaaagaaaggccaaaaaagtgtctactgtcgatccggtaataatgaaaaagataatttaacactttctcttggtgcttcagcagatggaaagctaatgccaataatggctatcttttcttataagcgaattaaaccgagtattctgaaaacatatcctaaaacgtgggtagttggcaagtctgataatgggtggatgACGTGCCAGACATTTTATGAATACATCGCAAATGCCTTCAATAGTTTCTTATTGAAAGAGAACATCAAAAAACCTGTGTTGCTCTTCCTGGATGGACATGTATCACATCTGTCTTTGCCACTAACAACTTTCTGTAATGAAAATGGCATAATTCTTGTGGCACTACTGCCCAACTCAACTCACGTGCTACAGCCCATGGACATAGCAGTATTTCATGCTTTAAAGAATTCTTGGAAAAAAAGTGTCCACGACTGGCGAATGGCTAATAACGCAAAAAAGATGGGAAGAGAAGATTTCGCTCCAGTATTAGAAGAGTGCCTTCAAAAGACTCTTAAGCCTGAGATTTTCATAAATGGATTCCGACATGCTGGTTTGTTCCCCTTTGATCAAAATGCCGTTAACTATGATAAACTCCTCAAATCAAACACCCCAAGTGAGGCAGGATCTACCAGTGATGCCGCTTCTACAGGCGAATCTCGCTCAGCTACGAGCTCACCTTGCGATGTTGAAAAATATGTCCATGAACAATCTTCACAACAACTGGAAAAGACTTCTCTATCACCGGCCAGTTCAAACCAATTTATTGCAGAATTTGAAAAGTTACTGGGCATGGAAAAACTCGAACGTTTTAAGGACAGCGATGAAGTTTGGCAAGGAGACATAAAGGATACGAATTTATTTTACTTTTGGAAAATGGTACATGGTAACAACGACGACGAGGTTGGAATCGGTGACTCTACTCTGAAAGCAAACGACTGCGTGCTAAACAATATAGAAGACAATCTTTTGAATATAGATAATAATTATAATATATTAGATGTTGTCGAAGATGATGGAAATGTAACACTAACACCTCAAGTAACGTTAGGTTCACATACTCCAGTTACTGATCATAATGCGAATTGCTATGAAAAGTCTTCCAGATCACCATCAGAAGCAAGCGCTGTTGAGAGTGATGTTGAGAATTTGCGTTTTAAAAAATTTAACCCTGTATTGAATAATACTTCCACTCCAACTACAAAATCCAAGAATATACTAGAGGTAGCAGCACCTGATACACCCATTCAGAATGAAAATTTGACTCCATCACAAGAAAGTTCGTGTGTAAAATCTCCTCTCAAATCATTTCCGGCCAATTGCATCACTCCACCACCTCAACACACCTGTGAAGCAATCAACCACGTACTTCCTGCAGGCAGTGTATCGCTTTTAGATACTGACGCACAAGCAAAGCAATCGATAACCGACTCAACTGTTGAAGCCGTTAATATAACCGAAGTTCATAATGATAGCACTCCTAGTAACCCAATGAAAGCACAATTTCCAACTCCTTTCAAAAACGCACTACTATGGCCTGTAGCAGACACAACTAAAAAAACAAAACAAAAAGTAAAAAAAGCAAGTGCTTCCAACGGTTGCTACTGCTGCGGAGTACCTGGAACATCAACGACGCCAAGAACAAGAAAAACAAGAAAAGATTGA
- Protein Sequence
- MPYKNYTNENLNHALESVRNEEMTAYKASKLYKVPYQTLLDKLKNKHTNPSGHARVLTEEEEKLIVKWIHHMAEIGFPVTKEQLLHTVGKLVKQLNRPNPFKDGVPGRHWYEAFFKRNPEVSSRVSQALTTARIGATEEKIRHWFDRVYKYLEENDYLDILQDPSRIFNCDESAFFLCFKGQAVLAKKGQKSVYCRSGNNEKDNLTLSLGASADGKLMPIMAIFSYKRIKPSILKTYPKTWVVGKSDNGWMTCQTFYEYIANAFNSFLLKENIKKPVLLFLDGHVSHLSLPLTTFCNENGIILVALLPNSTHVLQPMDIAVFHALKNSWKKSVHDWRMANNAKKMGREDFAPVLEECLQKTLKPEIFINGFRHAGLFPFDQNAVNYDKLLKSNTPSEAGSTSDAASTGESRSATSSPCDVEKYVHEQSSQQLEKTSLSPASSNQFIAEFEKLLGMEKLERFKDSDEVWQGDIKDTNLFYFWKMVHGNNDDEVGIGDSTLKANDCVLNNIEDNLLNIDNNYNILDVVEDDGNVTLTPQVTLGSHTPVTDHNANCYEKSSRSPSEASAVESDVENLRFKKFNPVLNNTSTPTTKSKNILEVAAPDTPIQNENLTPSQESSCVKSPLKSFPANCITPPPQHTCEAINHVLPAGSVSLLDTDAQAKQSITDSTVEAVNITEVHNDSTPSNPMKAQFPTPFKNALLWPVADTTKKTKQKVKKASASNGCYCCGVPGTSTTPRTRKTRKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -