Cper023113.1
Basic Information
- Insect
- Cydalima perspectalis
- Gene Symbol
- -
- Assembly
- GCA_951394215.1
- Location
- OX596229.1:3488479-3494125[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.5 5.9e+02 1.8 0.1 2 23 42 64 41 64 0.86 2 12 0.00073 0.057 14.4 0.9 2 23 87 108 86 108 0.95 3 12 0.076 6 8.1 2.4 1 22 112 133 112 134 0.82 4 12 0.008 0.63 11.1 0.5 1 23 212 235 212 235 0.96 5 12 2.6 2e+02 3.3 0.1 3 20 265 282 263 285 0.90 6 12 0.043 3.4 8.8 1.6 2 23 307 328 306 328 0.95 7 12 0.092 7.2 7.8 0.7 2 23 333 354 332 354 0.90 8 12 0.0044 0.34 12.0 1.7 1 23 359 382 359 382 0.96 9 12 0.0002 0.016 16.2 1.9 2 23 389 411 388 411 0.97 10 12 0.0083 0.65 11.1 1.7 1 23 418 441 418 441 0.98 11 12 6.1e-06 0.00048 20.9 1.2 1 23 453 475 453 475 0.98 12 12 4.7e-05 0.0037 18.2 2.1 1 23 481 504 481 504 0.98
Sequence Information
- Coding Sequence
- ATGGAACTGCTGAAAGACCATACATTGTCTCGGCATAGCGACCCAGATGAGGATGAAATAGAAGACGCTATTGGACGGTCTAAAAGAAAATTCCCATTCGTGCCAGTCAATGTAGTTGATTTGGAATGCAAAATGTGCTCTGATAGCATAGTAGGTTTTCGGGACTTGGAAAACCATTTGTCGGTGAAGCATAGCGTCGAAATACCGGAGAGCAAGGATCCTGTTGTGGTGCCCTTCAAGATAGCTAATGGCGAATGTGTGTGTGCGTTATGTGGAAAATCTTATACAGGCTTCAAAGGACTGAGCAACCACATGAACGAACATTACCctaattataaatgcgagatCTGCGGCACATGTTTCTTGGCGCCTCACCGTCTGAAGTCACATAACTTGGGTCATAGGCGCTCTGATAAGAATACCAAGTCTACACCTGAGGGGTCTAGTCGTGCACCGTACAAAGTCGCGCTCGTGAAAAGGAAGATTGTTAAACGACGCATCGTCCATGAAACGTGTGATTATAGCGACGAGATCTCGGAATTTGTAGACGAAGCTACATGGAGGAGCCGAGAGAGGACTGCCATCGCTCTCATACAGTACTCCACCATCCTGCCCTTTAAGACTACTTCGGGCTTCAAGTGCTTCTACTGCGAGGAGACGTACGGAGACATAGACATGCTTTCAAACCATACGAATCTCAACCACCCGATCCCTGAAGAGGCACACATAAAAGCCTCCATGGCGAAGCTAAAGAAGAACCACTTCGTCAAAGTCAACATCGCTCACCTGGCTTGCAGGATCTGCACGGACCCGATCACCACGTTCAGTGAGCTCAAGAAGCATCTGCCTCTACACGGAGTGGAAATAGATGAGGTTAACGACGGCGTAGTTCCCTACAAGATCGCGAATGGAGAGTGCGAGTGTGTCTTCTGCGGCGTCAAGTTCCCTGGCTGCAATGGTTTGAGTAGCCATATGAATGAGCACTACCCGAACCACAACTGCATTGAGTGCGGGCAAGGCTTCATGACATTGGAGAAGCTGAAGAGCCACAGTTTGGTGCACACGCTGGAGATCCATCCGTGCGAAGTCTGCGGCAAAGAGTACAAGTCGGAGAACGCGAAGCACAACCATTATAGAATCGTCCACAGAAATGAGAAGATTTCCAAGTGCCCCCACTGTGTGGAGACGTTCAGCAATTACTACTCTCGTCAGAAACACATTCTGACCGTTCACGGGATTAAAGTGAACCAATACCGGTGTGATATTTGCTCCCACGATTTTCTGATGAAGAATCTTCTGACGAGCCACATGCAGACTGTCCATCGTAAGGGCATGAGGAGCACTGTAGAGCGTCGGTACAAGTGCACTGAATGTGACATGAGGTTCACCAGGCTGAGCTATCTAGATGACCATATGGTCAAGCATACTGGGACGAGGAATTTCCAGTGCAAGGTGTGCTTGAAGTTCTACGGACGGAAGAAGACTTTGACGGCTCATATGAAGTCGCTTCATTCCAAACAggcctaa
- Protein Sequence
- MELLKDHTLSRHSDPDEDEIEDAIGRSKRKFPFVPVNVVDLECKMCSDSIVGFRDLENHLSVKHSVEIPESKDPVVVPFKIANGECVCALCGKSYTGFKGLSNHMNEHYPNYKCEICGTCFLAPHRLKSHNLGHRRSDKNTKSTPEGSSRAPYKVALVKRKIVKRRIVHETCDYSDEISEFVDEATWRSRERTAIALIQYSTILPFKTTSGFKCFYCEETYGDIDMLSNHTNLNHPIPEEAHIKASMAKLKKNHFVKVNIAHLACRICTDPITTFSELKKHLPLHGVEIDEVNDGVVPYKIANGECECVFCGVKFPGCNGLSSHMNEHYPNHNCIECGQGFMTLEKLKSHSLVHTLEIHPCEVCGKEYKSENAKHNHYRIVHRNEKISKCPHCVETFSNYYSRQKHILTVHGIKVNQYRCDICSHDFLMKNLLTSHMQTVHRKGMRSTVERRYKCTECDMRFTRLSYLDDHMVKHTGTRNFQCKVCLKFYGRKKTLTAHMKSLHSKQA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -