Cper021876.1
Basic Information
- Insect
- Cydalima perspectalis
- Gene Symbol
- -
- Assembly
- GCA_951394215.1
- Location
- OX596226.1:9688915-9693056[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5 3.9e+02 2.3 0.1 1 22 279 300 279 300 0.92 2 17 0.15 11 7.2 5.6 1 23 312 334 312 334 0.98 3 17 0.42 33 5.7 1.6 3 23 366 387 364 387 0.93 4 17 0.0087 0.68 11.0 0.2 2 23 442 464 441 464 0.96 5 17 0.0025 0.19 12.8 2.5 1 23 470 493 470 493 0.96 6 17 0.00067 0.052 14.5 0.5 1 21 497 517 497 518 0.95 7 17 0.0026 0.2 12.7 3.3 1 23 526 549 526 549 0.96 8 17 0.075 5.8 8.1 0.5 3 23 556 577 554 577 0.94 9 17 0.0019 0.15 13.1 0.2 3 23 591 611 589 611 0.95 10 17 0.11 8.6 7.6 2.3 1 23 616 638 616 638 0.98 11 17 0.0018 0.14 13.2 1.2 1 23 674 696 674 696 0.96 12 17 0.41 32 5.8 0.0 2 21 701 719 700 720 0.93 13 17 0.01 0.8 10.8 0.6 2 23 745 767 744 767 0.96 14 17 0.00018 0.014 16.4 2.4 1 23 773 795 773 795 0.98 15 17 0.017 1.3 10.2 6.3 2 23 802 823 801 823 0.96 16 17 0.0048 0.37 11.8 0.5 1 23 829 852 829 852 0.88 17 17 0.19 15 6.8 0.6 3 23 859 880 858 880 0.96
Sequence Information
- Coding Sequence
- ATGGAGGAACTCCAAGTTGAAACTGAGATCCAAGATGGCATACAAGTTTCAAACGAAGAAGATGAGTTCACCAACATGCAACGTCTCAAACAGAAACTTATGTCCGTTTGCCACGCTTCACGATTCTGCGGAATCTGTTTGGACTTAGACGGCACGGATAAGCTCTGGTCGGTGAATACAGAGTTTGATATTGCCGTTGGACAGCAAACTCATAAGAAACTGTTGAAGGACataattgattatattttgaatagtgAAAGTCGACAAATTATGGCCAGCTCATACCTCTGTAGTCATTGTACAGAGAAATCTATACAATCATACCTTTTCATATACAATGCCAAGCAACTATCCAAAATCATGTACAGTTGTGTAAACGAATTGCATTCTAAAGCTGCAAACATTAAAAACGAGTTAAGATCTATAGGAGATTGCGCAAATTCTAATATCGTTATTGTATTAGAGCAAGATATTGAGATGTGCGATTATATCGACATTGGTAAAATGACAGAGATAATTGCCAAAGAAACACCAAAAGATGAATTGGTACCCGTAAATAAGGAACAAAGGAAATCAGAAGATGTTGAAGTAGCTAAAGAACCAGCATCTAAATCATTTGACCTAGAAAATGTAGAAATTAAGAACATAGAAATTGAGAATGAaaattatgtacttttaaatCCAGAAAATGAACAGACTATAGAAATAACGTATTTAGAAGAAGAGATAGTAGAATCTTCTAAAGTAAAAGAAGAAGAACAGAGTCCAGTATTTATGAAGCTGGGAATTTCTACTTCTAAAAAGAGGAAAGCGAAATATatgcaaaaaattacattcgaATGTCCCAGGTGTAGAGTAATTATACCCACGTATAAAGCATGGAAGGACCATTATAGGAAATGTAAAAAGCTACAGATTGACCGCGACAATCTATTCAAGTGTAAAATTTGTTCAGACACATTTATATCGAAGAGATCTCTCAACTGTCATTACAAAACTCATTCTATGACGAGATGTAAAGTATGCCAATTCATAATTTCAGAGGAAGATGTGATTGAACATATGAAATTAAACCATGAAGATTACGTACACTTATGCCAATTGTGTAAATTCTTTTCTTACAACGCAGAAGGCTTGAAAGCTCACATGGTGAAGTTTCACAGCGGTCCAAAATGCGCACTGTGTTTCAAGAAAGTAAAAGAGCAAGATTTGAAGCACCACAGATGTAAATACAACTGTCTGGAATGTGTAGACAATGTCTGcattcattacaaatatttggtTTCGTTTAGAGATCAAGTAATTAATAAAGCTGTTAAGATTAAATGTGTGGACTGCGATTACGTTTGTCCTAGAAGGGAAGCGTTGTTAGGTCATGTCAACAGAGAACATTTGGACCATCATCCTTATACATGTGCTCATTGCGAACAGCAGTTCTATTCCCGTGCGACACTAAGGTATCATATCAACGAGTTCCACAGAGAACGATACGTTTGTGCATACTGCGATCAAGAGTTCTTCACGAAAACTTCATTGGAGAATCACACAAAACTCTGTCAGTGTATCGAGAGAGACTTCAAGTGTGATCACTGTACTTGCTCGTTTGGAACGCTGGAAGAATTGGCAAATCATGTCAAGTTAAGACACGAAGGAGGTTCATTAGACTGCACTCTGTgtgaaaaaaagtttttgtcgAGCGTCAAACTGCAGGATCATATATTCAAAGTGCATAGTGGGTTGCAAATTAAAAGAAAACGGTCGCTCCTAGACTGTCCCGTTTGCGACGAGAAGTTTGACAAGAGAATGCAATTATTGCAGCATGCAAAACTCCATGAGAATGCAAGGTTCCCCTGTAAAGAGTGTAACGAAGATTTTGACTGCATTAAGAAACTGCACGCTCACATCCGGATACACTATGACGATGTTATCCAATGCGTTAACTGCAAAAAGGTTTTAACAAAAACTTTCTTCCCCCATCACATGGTGTACTGTACAGCAGGCAGGCCTTCTGAGAACGTTTTCACGTGTGAAACATGCGGCCGGACTTATTCCAACGAAGTCCAACTAAGATTCCACCGGAAAGCGCATTTAGATAAAGTCCCTTGCCCCGTCTGCGAGAAACCGACTCGACCTATTTACTTGAAGGGACATATGAAGTACTGCAAACCTAGAAAAGGTAAACCGAACAAGTCATCGACAACAAAACGACAACAGAAGTACCAGAAAGGTGTTAAATGTGACTGGTGTGATCATATGATGTCCAGATACAGCGAACTAGAGGCTCATGTGAACAGATTTCACTTGAAAGTGAAGCCATATCAATGTAACTATTGTAAGAAATCCTTCTTCGGTAAGGAACGATTAAAAGACCATCTAGTGACGCATACTTCAGCCAAAGCTTGTTACTGCAGTGTATGCAAtaagaaattacaaaataacgCCTGTCTGAAACTCCATATGAGAAAGCATACTGGCTACACACCGTATGCTTGCGAGATTTGCGGAGAAAGATTTAGAACTTCGAGTATAATGAATACGCACAAAGTTAAGAAACATTCTGAAAGGACAGTGGCTTGTCCACTCTGCGGCGCTATGTTCCATTTGGCGAGAGAAATGAGGAGTCACTTCAAGAAGGTCCATTGGAAACAGAAGGGGAAGAAATTTGATCCGCGCGATGTTAAGGAGTTGAGCCCGGCGTTCTACCATCTGTTTGAGGACCGCAGACTACCGAAAGTGGATGGGGAGGAACTGGTTATTTCCTCGAAGTTCAATGAGAAATACGACTAA
- Protein Sequence
- MEELQVETEIQDGIQVSNEEDEFTNMQRLKQKLMSVCHASRFCGICLDLDGTDKLWSVNTEFDIAVGQQTHKKLLKDIIDYILNSESRQIMASSYLCSHCTEKSIQSYLFIYNAKQLSKIMYSCVNELHSKAANIKNELRSIGDCANSNIVIVLEQDIEMCDYIDIGKMTEIIAKETPKDELVPVNKEQRKSEDVEVAKEPASKSFDLENVEIKNIEIENENYVLLNPENEQTIEITYLEEEIVESSKVKEEEQSPVFMKLGISTSKKRKAKYMQKITFECPRCRVIIPTYKAWKDHYRKCKKLQIDRDNLFKCKICSDTFISKRSLNCHYKTHSMTRCKVCQFIISEEDVIEHMKLNHEDYVHLCQLCKFFSYNAEGLKAHMVKFHSGPKCALCFKKVKEQDLKHHRCKYNCLECVDNVCIHYKYLVSFRDQVINKAVKIKCVDCDYVCPRREALLGHVNREHLDHHPYTCAHCEQQFYSRATLRYHINEFHRERYVCAYCDQEFFTKTSLENHTKLCQCIERDFKCDHCTCSFGTLEELANHVKLRHEGGSLDCTLCEKKFLSSVKLQDHIFKVHSGLQIKRKRSLLDCPVCDEKFDKRMQLLQHAKLHENARFPCKECNEDFDCIKKLHAHIRIHYDDVIQCVNCKKVLTKTFFPHHMVYCTAGRPSENVFTCETCGRTYSNEVQLRFHRKAHLDKVPCPVCEKPTRPIYLKGHMKYCKPRKGKPNKSSTTKRQQKYQKGVKCDWCDHMMSRYSELEAHVNRFHLKVKPYQCNYCKKSFFGKERLKDHLVTHTSAKACYCSVCNKKLQNNACLKLHMRKHTGYTPYACEICGERFRTSSIMNTHKVKKHSERTVACPLCGAMFHLAREMRSHFKKVHWKQKGKKFDPRDVKELSPAFYHLFEDRRLPKVDGEELVISSKFNEKYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -