Cper018157.1
Basic Information
- Insect
- Cydalima perspectalis
- Gene Symbol
- -
- Assembly
- GCA_951394215.1
- Location
- OX596221.1:10210494-10224207[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00038 0.03 15.3 0.9 1 20 334 353 334 357 0.96 2 9 0.00022 0.017 16.0 4.0 2 23 365 386 364 386 0.96 3 9 3.5e-05 0.0028 18.6 6.2 2 23 418 439 418 439 0.98 4 9 0.0069 0.54 11.3 0.4 1 23 443 466 443 466 0.94 5 9 0.054 4.2 8.5 0.4 2 19 482 499 481 502 0.93 6 9 0.19 15 6.8 9.7 2 23 535 557 534 557 0.90 7 9 5.8 4.5e+02 2.2 0.4 3 21 571 592 570 593 0.58 8 9 2.5e-07 2e-05 25.3 1.4 1 23 596 618 596 618 0.98 9 9 5.6e-06 0.00044 21.1 1.5 1 23 624 647 624 647 0.97
Sequence Information
- Coding Sequence
- ATGTGTGACGTGAAAGTGTGCAGGATATGCCTGCGAAACGAGGCAAAGTTCTACAGACTTGACGAATaccatttaaaattgtattatgagGAAGTGACGACTTTGCCAGTACCAGACAAAGATGGCTCTTCACAATACTTCTGCTACGAATGTGCAGCGCTGCTATACAAATACCACAGATTCAGAGAGAAATGTTTTGATGGACAAAGAGTATTGCGGGAGATGTTGTACAGCGGCCCTatCACATATGCTGGCATCTGTGAGCTGAACATGAGAAAGATTCACAAATGCCAATTTGGGCATTTAGAAATCCTAGCGACAAACGAACGCATCAAAACATACCATATCCAGCACTCACAGGTGTATAAAGAAGAGTACCAGAATGACTTTAAAGAGGAAATTGTTGATGTTGATTACTCCGATGGTCCATtcactgatgatgatgattttgagTGCAAAGACCCTGAAACGGATCCTGTTGCTGAAGAAAACCAGTTAGATTTGATTGGTATGAAACCTGAAGAGATTACTTATAGCAATAAAGAAGCAATATCGGATATTATGATGAAGACTGTCATTGAAGTGGAATTGATGAAGCCTGAATTGACAGAAGTAGACGTTTTTGTATCAGAAACAAAAGACGAAAAACCTATAAAGGAAATTAAGcgaaagaaaaatgttaaacaGAGAAGAGCTAAACAAACAAGTCGTATTAGACTAACTAAGAAAAGATacacaaaaagaaagaaaagatcTGAACCAGATTACGCAGATAGCGACTCGTCTGAAGAAGTACTCAGTAAGATTAAGTCTAAGAAAACTGTGTCTGTGATATCACCGGATACTGAGAAGAGTTACAAGTTCAATAAACCTAAGACTAAGTTGAAGAATTTAGCGTTTCTAGATTCCGGCTTCTGGAAAAAGTCAAGTTTGACTGAAGAGGAGGCGTTGAGGAACTTCGAAGCGAAAGCTGAAGATAGGAAGTATTTGAATGCAGCATTTAAGTGTACATACTGTTATAAAGGCTTTTCTCAAATTAATATGCTCGAAAGGCATATACCGCAGAGGCACGGAGAGGGTGCAGGCAAGTTGGTGTGCCGGTTCTGCAAGATGCGCTTCAAGTCGAAGTACTTCCTCAACAAGCACATGCGGCAGCATTACACTAAGTACGAGTGTCTGCGGTGCGACCTCGTCTGCTCCCTCGAAAACTCTGCGCTCTTCCACGAGGAATACCACAATGGCGTCGTTCGGAAATGTCCACACTGTGATAAGGAATTTAAACACCTGTCAACGTTCTACACGCACCTGCGCACGCACAGGAGCAAGCACATGTGCGCGCTGTGCGGCGAGTCGTTCGTCAGCGAGCTGGGCCTGCGCCTGCACAGGAAGGCGAAGCATCTAGCTGATACTGAGCCACCAGTGAAAATGTTACCTGAGAACATGTACTGTGACATATGTCAGATGAAGTTCGAGACGAAGGACGCGTATGACAAACACTTCGCGCACTCCGCCATGCACACTGACCAgAGGTCGAGGGTTGAGAAGACACTGTGTGCGGTCAGGAAGAGCCATTTACCGAGGAAGACGTCCAAGAAACCTACCACGTGTCATCACTGCGGCAAACACTTCGACACCCAGTCGGCGTGCATGAAGCATCACCTGGCGATGCACCCCGGCACCTCGTTCTTCTCGCCCAAGGAGCGGGTCATCTGCGAGATATGTGGCGCTTCCTTAGCTCCTGGCAGCGTGGCGTCCCACCTCAACCAGCACACTCGCAGCAAGATGTACACGTGCGACACGTGTGGTCGCTCCTTCACCACTAGTACCATGCTGCGGACACACATGGTGACCCACACTGGGGAGAAGCGGTTCGCATGCAGTCTCTGTGATAAGCGATTCACCCAGAACGGCAGTCTTAGTCTTCACTACCGCACCTTCCACTTGAAGCAGCCTTATCCAAAAAGGAATAGAAGAAAGAAAATCGACAAACCGAGCGTCGAAAGCTTTAATGGTAAAGAAGAATAA
- Protein Sequence
- MCDVKVCRICLRNEAKFYRLDEYHLKLYYEEVTTLPVPDKDGSSQYFCYECAALLYKYHRFREKCFDGQRVLREMLYSGPITYAGICELNMRKIHKCQFGHLEILATNERIKTYHIQHSQVYKEEYQNDFKEEIVDVDYSDGPFTDDDDFECKDPETDPVAEENQLDLIGMKPEEITYSNKEAISDIMMKTVIEVELMKPELTEVDVFVSETKDEKPIKEIKRKKNVKQRRAKQTSRIRLTKKRYTKRKKRSEPDYADSDSSEEVLSKIKSKKTVSVISPDTEKSYKFNKPKTKLKNLAFLDSGFWKKSSLTEEEALRNFEAKAEDRKYLNAAFKCTYCYKGFSQINMLERHIPQRHGEGAGKLVCRFCKMRFKSKYFLNKHMRQHYTKYECLRCDLVCSLENSALFHEEYHNGVVRKCPHCDKEFKHLSTFYTHLRTHRSKHMCALCGESFVSELGLRLHRKAKHLADTEPPVKMLPENMYCDICQMKFETKDAYDKHFAHSAMHTDQRSRVEKTLCAVRKSHLPRKTSKKPTTCHHCGKHFDTQSACMKHHLAMHPGTSFFSPKERVICEICGASLAPGSVASHLNQHTRSKMYTCDTCGRSFTTSTMLRTHMVTHTGEKRFACSLCDKRFTQNGSLSLHYRTFHLKQPYPKRNRRKKIDKPSVESFNGKEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -