Cper021877.1
Basic Information
- Insect
- Cydalima perspectalis
- Gene Symbol
- -
- Assembly
- GCA_951394215.1
- Location
- OX596226.1:9705677-9712138[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9.9e-06 0.00077 20.3 5.0 1 23 243 266 243 266 0.97 2 11 0.1 7.9 7.7 0.4 1 23 279 301 279 301 0.98 3 11 0.00013 0.0098 16.8 3.4 1 23 573 595 573 595 0.98 4 11 0.0025 0.2 12.7 2.3 2 23 601 623 600 623 0.96 5 11 2.7e-05 0.0021 18.9 1.0 2 23 632 653 631 653 0.96 6 11 2.9e-05 0.0023 18.8 3.4 2 23 657 678 656 678 0.97 7 11 0.058 4.5 8.4 1.4 2 23 692 714 691 714 0.96 8 11 0.00011 0.0083 17.0 2.3 3 23 722 742 720 742 0.97 9 11 0.15 12 7.1 2.3 2 23 749 770 749 770 0.98 10 11 0.00063 0.049 14.6 1.7 1 23 776 799 776 799 0.95 11 11 0.00017 0.013 16.4 2.4 1 23 803 826 803 826 0.96
Sequence Information
- Coding Sequence
- ATGGAGCCAAACGATATTTCTAGTTTATTAAATACCCAGGCCgataatagtatagatattaatcCGTCAATAATCAATAAGACATTTCTGACTGATGAAGATGCTGAAGAGACGGTAAAACCGGTGAAAAGAGAGATTTTGACTACTAAGAATGCTGTTAAGTATCTTCTCGAAGGAAGGTTGAAGAAGAAAGTATGTCGATACTGCTTAAATGTAGCTTATCCTCTGTCGGAATTGGACCAAGTTCTAGAAATAGGCGGTACGGGTGTCATGTACAAGATAACAATAAGAGATATGGTTGCTAGTTTTCATCCTTTCAAAGTCGCAGATGACCCCAACTTTCCGAACAAAATATGTGATAAGTGCCTGAGCCGAACCATCAGTTCGTATCTTTTCACCCAACAATGCGAACGGTCAGAACGAGCACTACGTAACTGTTTCGAAGACATGTACAACAAGTTAGATAAACTAGATCCTTTAGAACCTAAGCAGAAAAAACGTGGCAGGCAAAAAATACATCCAAACTACAATATCTTGTATACAGAACACAAAAAAGTAATTGATTATGCTGAACCTATTATGAATATTGTGAATCTCGGTGCCGAGTTTATAGAGCCAGAAGGAAATGTCGTTGtgaataaatttgaatgtatgaaGTGCTGTCTTGTGTTACCAAACGTGGTATCATTAGCTAATCACGAGAAATTACATCCAAAGAGCATGTACTACCATTGTCGATATTGCGGCAAATCTTTTACTAAGCGCAATCTTTTGAAAAGGCATAGGAAAATTATCCATGAGGAAGAGAAACAGACACAGCTGGAACCAACAGATTTTAAATGTGtagaatgtgatgttgtgatCGAGAATCATGGTAAATATCTGCAGCATATTGAAAAGCACAAATTTCAGATGGTAATGGAACATTTGGTTGAGAAGAATATGGACAAACTATGCGCCGTGTGCTTTGAAAAGAATAAGCGTTTAGTGGATCTGGATGGGATGATTTGTTTGCACGGTGGCTATCCAGAAATGATGGGGGACCGGACTCTTTACAATATCTTGGGATCTACGGTGCCTGATATGAATATTCTACATAACTACACGGGgtcaaaaatatgtgaaaagTGCCTTAACCACGCTATCACATCATATGTATTCATACAACAGACACAATACGTTAGAAATAGATTGAAAACTTGCATTAGTCTTATGTTAGATAATTTGAACAAAGTTAAAGATCCCGAAGCTAATCTGTTTATCGAAATATCTCCAGATACAATAATGCCTAATGTGGAATTAGAGTTTGATGAAAATCTACTGCTTGATGAGGAAGAGATAGATGAATCGAAACTTAGAATTGAAGTTTTAGAGGACGAGTTTAGATTAGATTCCGAAAGTGGAGAGAGTGAGGCTGATAGTACGGAAATAAAAGATGACGGTAAAGAAAAGACTCGAGATATTTATGAATGCAATCTTACGTCGGATGATGAAAAATCTGATAGTAAAAGCCTGTTTGATTTTGTAATGCCTGAAGAATCCTTTGAGACACTAGATAATCCTGCGAAGAAAGCAATTAGGACatataagaaaagaaatttATACAATGGATTACAATCGCACAATGATAAGAAATATAGCTCTCTGAACATCTGTAGCGAATTTCTGAcattcaaaaagaaaaagagaCCATTCAGAAGATTTTACAGCTGTAAATTCACTTGTCCGCTGTGCAGTAAACATTTTGTATCAGATTACTTCCTCAAAAGGCACATAATGaaacatgtatataaaaaacttaAGTGCAAACTATGCGACGGCGATTTCAAATCGAAGTTTTACCTTTGCGAACATATAAAGATGATTCATGTTTTGAAACAGAGCGAATTTTCGTCTTGCAAAGTCTGTGGTAGGAGTTTTATAAATCCTGCAAGGCTGGAACGTCATTTACACAGTCATTTGTCGACGGAATGTCAGTTGTGCAACAAAACTTTTGCGTCGCAAAAACATTATGAAAGTCATATGCAAAGGCATGAAGCTAAGCTCAGATTGCTAAAGCAACGAAGAGCCCAAACATGCAGTTTCTGCGAGAAAGAGTGTTCAAACGATAACGAACTCTCGGTCCATGTGAATAAAGTCCATTTGCAGATAAAGCCTTACGGATGTGACATGTGTGATAGACATTTTTACACGGAATCTAATTTGACCAGTCATAAAAAAGTGCACAATATATTCTCTAAAGAGAAATGTGAGTTTTGTGGTAAAATATTGAAGTGCCGGAGAGATTTGGTCGTTCACGTCAGGAAACATATTGGGGTGCAACCACACACTTGTCCTGTATGTAACCAATCGTTCTACTCCAGCGGCAAAGTAAAAATGCATATGTCATTATACCACGGAGGTATATTTTGCTGTAAACTTTGTAAGACTATATTCAGGACTAAAAGTGGACTTCGAATGCATATCAGTATAgctcataatataatttaa
- Protein Sequence
- MEPNDISSLLNTQADNSIDINPSIINKTFLTDEDAEETVKPVKREILTTKNAVKYLLEGRLKKKVCRYCLNVAYPLSELDQVLEIGGTGVMYKITIRDMVASFHPFKVADDPNFPNKICDKCLSRTISSYLFTQQCERSERALRNCFEDMYNKLDKLDPLEPKQKKRGRQKIHPNYNILYTEHKKVIDYAEPIMNIVNLGAEFIEPEGNVVVNKFECMKCCLVLPNVVSLANHEKLHPKSMYYHCRYCGKSFTKRNLLKRHRKIIHEEEKQTQLEPTDFKCVECDVVIENHGKYLQHIEKHKFQMVMEHLVEKNMDKLCAVCFEKNKRLVDLDGMICLHGGYPEMMGDRTLYNILGSTVPDMNILHNYTGSKICEKCLNHAITSYVFIQQTQYVRNRLKTCISLMLDNLNKVKDPEANLFIEISPDTIMPNVELEFDENLLLDEEEIDESKLRIEVLEDEFRLDSESGESEADSTEIKDDGKEKTRDIYECNLTSDDEKSDSKSLFDFVMPEESFETLDNPAKKAIRTYKKRNLYNGLQSHNDKKYSSLNICSEFLTFKKKKRPFRRFYSCKFTCPLCSKHFVSDYFLKRHIMKHVYKKLKCKLCDGDFKSKFYLCEHIKMIHVLKQSEFSSCKVCGRSFINPARLERHLHSHLSTECQLCNKTFASQKHYESHMQRHEAKLRLLKQRRAQTCSFCEKECSNDNELSVHVNKVHLQIKPYGCDMCDRHFYTESNLTSHKKVHNIFSKEKCEFCGKILKCRRDLVVHVRKHIGVQPHTCPVCNQSFYSSGKVKMHMSLYHGGIFCCKLCKTIFRTKSGLRMHISIAHNII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -