Basic Information

Insect: Cydalima perspectalis
Gene Symbol: -
Assembly: GCA_951394215.1
Location: OX596229.1:3382422-3391427[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.054 4.3 8.5 0.4 1 23 216 239 216 239 0.92

2 10 0.011 0.84 10.7 0.2 2 23 266 288 265 288 0.95

3 10 0.0015 0.12 13.4 0.2 1 23 310 332 310 332 0.98

4 10 0.037 2.9 9.1 0.1 1 23 336 359 336 359 0.91

5 10 0.0048 0.38 11.8 0.7 1 21 364 384 364 387 0.88

6 10 0.066 5.1 8.3 0.5 2 23 394 416 393 416 0.90

7 10 0.0006 0.047 14.7 5.5 1 23 423 445 423 445 0.99

8 10 0.00061 0.048 14.7 2.0 2 23 452 473 451 473 0.97

9 10 6.3e-08 4.9e-06 27.2 2.5 1 23 482 504 482 504 0.99

10 10 3.6e-05 0.0028 18.5 1.2 1 23 510 532 510 533 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.054	4.3	8.5	0.4	1	23	216	239	216	239	0.92
2	10	0.011	0.84	10.7	0.2	2	23	266	288	265	288	0.95
3	10	0.0015	0.12	13.4	0.2	1	23	310	332	310	332	0.98
4	10	0.037	2.9	9.1	0.1	1	23	336	359	336	359	0.91
5	10	0.0048	0.38	11.8	0.7	1	21	364	384	364	387	0.88
6	10	0.066	5.1	8.3	0.5	2	23	394	416	393	416	0.90
7	10	0.0006	0.047	14.7	5.5	1	23	423	445	423	445	0.99
8	10	0.00061	0.048	14.7	2.0	2	23	452	473	451	473	0.97
9	10	6.3e-08	4.9e-06	27.2	2.5	1	23	482	504	482	504	0.99
10	10	3.6e-05	0.0028	18.5	1.2	1	23	510	532	510	533	0.95

Sequence Information

Coding Sequence: ATGGAGTTCAAAAGTGATACAGACTATGGAGAGTGCAGATGCTGCCTGGCAAAAGGAAATCATAGAAATATAacaaaagaatattatattgatgGAAGTCGCGAAatatattctgatatttttattgaatgcttcaatttatttCTTTCAACCAACACAAACCTCAGCACCCTCATATGCATTACGTGCGTGGAGCGTCTCCGCAGCGCGCGGGACTTCAAGCAGCTCGTGCTGCGGACGGAGGAGCAGCTTATGGACGCGCTGCAGAACTGCGGCAACGAGCAGATGGTGCTGGTCAACGTTCCCGTGTCCAAGGAGACCCTCGACACAACAATAGGCTTCAAAATCCAAATGCACGAGTTTGAGGAGTCGCAGGTGGAGCCCCAACCCCAGGCTGCATCCCAAGCGGAAACAAAGAAGGAAGTGTTAGAAGCGAACCCGCCCGAGGATAATAACATGGCAGCTGAGAGCAGTTCTGCAAGTGAAGTAGACTACACACCAAGTGCACCGCCAAAAGGCAAGAATCACAAAAAGCGCTTGATCCCTGAACCGAGGAAGCGTGAAAAGTTAGCGCTTATATACAACACGACCACGCTGCTAGAGAACTGCAACGCCACACTCTTCAAGAGCAAGATGCGCGCTGGCTTTCCTTGCTTCTACTGTCGAGAGATATTCGATAACTTTGACATTCTTAGACGACACCAAATAGACGAGCATACTAGAAACACTATATCTAAAGCCTTAAAAACCTACTCCGCTGAGAGCTTAGTCGTCTACGCAGATGTTACAGATTTAAAATGCACGTTATGCGATTGGTCCATGCCGAGCCTCAAAGAATTAAAGTCTCATCTGATAAAGATTCACGATAAACAGTTCTACCTAAAAGTGACTGACCGTGTTGTCCCGTATAAACTCTATGACAATTATTTCGAATGTCAAATCTGTGCGTTCAACTTTGAAACGTTTGGTGCTATAGAGAGGCATATGAATACACATTATAGGaattatgtatgtgatatatgCGGTGGAGGTTTCGTGACTACACTACGGTTGAAGACACATCTGTACGCTTTGCATAAAGAGGGAACATACCCTTGCGAGTTCTGTGATAAAATTTTCACGACCCAATTGAAGTATAAAGGACATGTGGACTTTGTTCATAAAATGCTGAAGAAACTGAAATGCCAGAAGTGTCCGGCCCGGTTCTCAGATTACTTTGTGCAGAAAAAACATATGGTTGAAGTGCATGGAGAATTGCCTATAGTATACCGTTGCAATGTGTGCTCTAAGGCTTTTAACAGAAGGTACACTTTATCTTGTCATATGAAGAGACATTTAGAACAGAAAGACGTTGAGTGTGATCTGTGTACGTACACCTGTTATAATAAGACCGAGTTGAGGGAGCATATGCTGAAGCACAACAAACAGAATATGGAGAGGATGTTCCGTTGTTCGATTTGTGACAAGACTTATTCTAGGAAGAAGACGCTGAGGGAGCATATGAGGATACACGCTGACGACAGGAGGTTTGCATGCCAGATCTGTGAACAGGCGTTTGTTCAAAGTAATAGCCTGAAAACGCATGTACGGAATCATCATAGAGATTATTTTAGTGAATGGAAAGTGTCGGATAATATAGGATAG
Protein Sequence: MEFKSDTDYGECRCCLAKGNHRNITKEYYIDGSREIYSDIFIECFNLFLSTNTNLSTLICITCVERLRSARDFKQLVLRTEEQLMDALQNCGNEQMVLVNVPVSKETLDTTIGFKIQMHEFEESQVEPQPQAASQAETKKEVLEANPPEDNNMAAESSSASEVDYTPSAPPKGKNHKKRLIPEPRKREKLALIYNTTTLLENCNATLFKSKMRAGFPCFYCREIFDNFDILRRHQIDEHTRNTISKALKTYSAESLVVYADVTDLKCTLCDWSMPSLKELKSHLIKIHDKQFYLKVTDRVVPYKLYDNYFECQICAFNFETFGAIERHMNTHYRNYVCDICGGGFVTTLRLKTHLYALHKEGTYPCEFCDKIFTTQLKYKGHVDFVHKMLKKLKCQKCPARFSDYFVQKKHMVEVHGELPIVYRCNVCSKAFNRRYTLSCHMKRHLEQKDVECDLCTYTCYNKTELREHMLKHNKQNMERMFRCSICDKTYSRKKTLREHMRIHADDRRFACQICEQAFVQSNSLKTHVRNHHRDYFSEWKVSDNIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -