Cper022408.1
Basic Information
- Insect
- Cydalima perspectalis
- Gene Symbol
- -
- Assembly
- GCA_951394215.1
- Location
- OX596228.1:965595-975937[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00048 0.037 15.0 4.5 1 23 255 278 255 278 0.98 2 9 0.009 0.71 11.0 0.4 1 23 282 305 282 305 0.95 3 9 0.003 0.24 12.5 0.1 2 22 320 340 319 344 0.92 4 9 2.6 2e+02 3.2 0.0 3 23 354 373 353 373 0.90 5 9 0.00025 0.019 15.9 0.1 2 23 401 423 400 423 0.96 6 9 5.2e-06 0.0004 21.2 1.7 2 23 433 454 432 454 0.97 7 9 9e-05 0.0071 17.3 0.3 3 23 462 482 462 482 0.95 8 9 6.9e-06 0.00054 20.8 1.6 1 23 488 510 488 510 0.96 9 9 0.00037 0.029 15.4 0.4 1 23 516 539 516 539 0.92
Sequence Information
- Coding Sequence
- ATGACTTCAACAGAAGTTTGTAGGATGTGTTTAGCTGTCGACACTCAGATGTACACAATAGCCGATACACCGCTTCAGAAAATCTATGAGAAAATGACTGATATAATGCTACAAACTGAAGATGGCAGGCCGGTCCTGGCATGCTACTTGTGTCATCACTTACTTAAGAAGAGTGATACCTTCATCAAGAGGTCTGTGACAGCCGATGGTCTTCTGAAGGAGATCCTAGCGAGAGGGGTGGAgATCACAGAGAAGTCTGTTAGCCTAATAGACCGGTCTCCCTTCAACAATTCCCTTGTGATCACGAACACGGATCGCTTGAACATAGACACAGATGTTCACACATTAGAAGTTCCGGTGAAAGTCGAACAGTGCCTAGTGAAAAGAGAGGGAGATGGCGAGATGATGGAAGAGATAGAAGTTGaTTTCAGCGGAGCAGACCAGACCACTAGAGAGCTGGAGGCTCCTCCACTCGGAGATCAGCAGAGCTCCTCGGAGTCGGAAGACGATGTCCCTCTGAAGGTTTTCAGCACAAAAAACGCTGACAAGAGAGTTGAAAAAAAGCGGAAAGCGAAGATTAGGCAGCAGAATCACGAGGAATCAAAGAAACTTCTGGAAAATGTCAGCGAGATCTACCTGACCAAAGAGGAGCAGTTGGCAGAAGTCCTGGCGCGCGCCAAGTCGCTCAACTATCTTAACTCGCCGTACAAATGCGATCTGAACCAAGCTAGAGAACACGAGAGATGGCACAACGGTCACACGTACGAGTGTCAGCTGTGCAGCCACACCTTCAGGAAGCCGACGTCGTACCTGACGCACATGCGCAAGCGGCACCCCACCGGGCACGTGTGCGCCGACTGCGGGCTCGGCTTCGTCGGGCGCCACGGGCTGCTGATGCACAGGAGCAAGGCGCATTGTGCGGAGCAGAAGGACACCACCGAGGAGTCGGAGACCAGCGTCTGCGCAGATTGCAACGTCCAGTTCCGGTCGCGCGAGGCGTGGCAAAGACATATCCTCACCTCGATCAAGCACGCCGCGCCCAACGCAAACACCGCGGCGTGCCTCTGGTGCGGCGTGAGCGTGCCGGcggcggcgctgcgcgcgcacgtGCGCGAACACGCTCGCGAACATgctcgcgcgcgcgccgccgaccaCGCGCGCCAACATGGGAGcgagccgcccgcgccgcgcctgcAGCTGCCTTGCGAACAGTGCGGCGCCAAGTTCTCCAGCCGTTCAAAGGTTTTGGCCCACGTGAGGCGAGTCCACCTGGGGCTGAAGTACGATCGGCGGCTGGTCTGTGAAGTGTGCGGCAAGAACTGCACCTCCAACGCGTCCCTGAAGTACCACCAGCGCACGCACACCGGCGAGCGGCCGCACGGCTGCGCGGCGTGCGGCAAGCGCTTCGCGGACCGCAACCAGCTGCGCATCCACGCGCGGACACACTCCGGCGACCGGCCGTACTGCTGCGCCGCGTGCGGGAAGCGCTTCAGCCAGAAGCCGGCGTTGAATAGGCACTATAGGATCCACACAGGGGCGAAGCCCTACGCGTGCCAATTTTGCGCGAAGACCTTCAGCCAGTCCAACTCTCTCAAGCTTCACGTGAGCGCCGTTCACTTGAAGTTGCCTCAGAACAAGAAGAAGGCAGCCGCCACAGCCCCCGAGCAGGCCTCATAA
- Protein Sequence
- MTSTEVCRMCLAVDTQMYTIADTPLQKIYEKMTDIMLQTEDGRPVLACYLCHHLLKKSDTFIKRSVTADGLLKEILARGVEITEKSVSLIDRSPFNNSLVITNTDRLNIDTDVHTLEVPVKVEQCLVKREGDGEMMEEIEVDFSGADQTTRELEAPPLGDQQSSSESEDDVPLKVFSTKNADKRVEKKRKAKIRQQNHEESKKLLENVSEIYLTKEEQLAEVLARAKSLNYLNSPYKCDLNQAREHERWHNGHTYECQLCSHTFRKPTSYLTHMRKRHPTGHVCADCGLGFVGRHGLLMHRSKAHCAEQKDTTEESETSVCADCNVQFRSREAWQRHILTSIKHAAPNANTAACLWCGVSVPAAALRAHVREHAREHARARAADHARQHGSEPPAPRLQLPCEQCGAKFSSRSKVLAHVRRVHLGLKYDRRLVCEVCGKNCTSNASLKYHQRTHTGERPHGCAACGKRFADRNQLRIHARTHSGDRPYCCAACGKRFSQKPALNRHYRIHTGAKPYACQFCAKTFSQSNSLKLHVSAVHLKLPQNKKKAAATAPEQAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -