Cper021849.1
Basic Information
- Insect
- Cydalima perspectalis
- Gene Symbol
- -
- Assembly
- GCA_951394215.1
- Location
- OX596226.1:8600477-8605958[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0041 0.32 12.1 4.9 1 23 162 185 162 185 0.97 2 18 7e-05 0.0055 17.6 0.8 1 23 194 217 194 217 0.96 3 18 0.013 1 10.5 0.4 2 23 230 252 230 252 0.97 4 18 0.0041 0.32 12.1 0.9 1 23 261 284 261 284 0.95 5 18 5.1e-06 0.00039 21.2 1.8 1 23 295 318 295 318 0.97 6 18 0.00021 0.016 16.1 0.4 3 23 348 369 346 369 0.96 7 18 0.0013 0.1 13.6 1.2 2 23 379 401 378 401 0.96 8 18 0.052 4 8.6 0.6 2 19 406 423 405 426 0.93 9 18 0.0005 0.039 14.9 0.4 2 21 431 450 430 453 0.94 10 18 0.085 6.6 7.9 1.1 3 23 463 484 462 484 0.95 11 18 0.00029 0.023 15.7 2.2 1 23 489 512 489 512 0.93 12 18 0.0005 0.039 14.9 2.3 2 23 524 546 523 546 0.94 13 18 0.0023 0.18 12.8 1.6 1 23 570 593 570 594 0.94 14 18 0.05 3.9 8.6 2.8 2 23 628 649 627 649 0.97 15 18 7.9 6.2e+02 1.7 1.8 3 23 657 679 655 679 0.89 16 18 0.21 16 6.7 0.7 2 23 687 708 686 708 0.92 17 18 0.0058 0.45 11.6 0.2 1 23 715 737 715 737 0.97 18 18 0.18 14 6.9 2.0 1 23 743 766 743 766 0.96
Sequence Information
- Coding Sequence
- atggtgacaatcaaaGAGGAAAtagatatacaaattaaaaaggaGTATcctgatgtaaaaataaagatagagAAAAATGATGATCCGCTAACAAGGAAAGACCCAACCTCCTTTTTACCGGAAGAACCAATGACATATGAAATaaaagagaagaaaaaaaagaagaagaagaaaaagaaagagCAAGAAGATCCATTCAAAGATATAGAAGTAGATGATAAAGTGTTTTGTATGGAACCCTCCCTTGAACTGAAAATGGATCCTGAAGTCAATATTAAAGTGGAGAATATTGAAGTGGAGTTGGATTTTAATGATTTCGCTAACAACACTGGCCTGATGGTAGAAGGTCCTCAAAGCGAAGACAGTCAAGAGCCAATAGTCAAACTTGAAGAGCAGAATCGGGAAGCTGTTCTACTGACCTTCGAAAGTGTCATCAACGAACATACTGTCTTAGGATACTCGGAAGTGAAGCCAGCTCCCACGTTCATGTGCAAAGTCTGCCATCTAGTCTTCCAAACAACCAAAACTCTTCGGATGCATCAGAAAAGAAAGCACAAAATCTATAGACGAGCCTTCAAACACATCTGCGATTACTGCGGAATGTCTTATGAGATGAAGAACAGTCTGATCGCTCATATTAGGAGGAAACATGGGCCTAATGCTAGTCCTGATGACCACGAAGAGAGGACGTGTGAGATATGCGCTCTAGTCTTTAAAGGCATGGCTCGCTTGAGGATGCATATGCGGAGAAAGCATGGCTCCTTCGAAGACTCATTCAAGCATGCCTGCAGCGAATGTGGGCTGACTTACGATAAGTACAGGAGTCTTATAGTCCACGTTCAACGGAAGCACACTGGGAAGAAACCTATTTCGAACCAGTGGTACAACTGTCCTTTTTGTCCGAAGATTTTCTCACGGCGAGAAACATACACACGGCATATTCAGAGGAAGCACAAAGTCTCCGAAGAGGATGCTAAGAAGGAAGTCGACGGTGTCTCAGATTTGGAGACGTCACGTAATGCAGAAACGGGGGAGATAATTTGTAAAGAATGCCCTCTTGTTTTCTCCTCGATAAATTTCTTGAAACTCCACATGAGACGGAAGCACAATGCTCTGAAAGAGGATTTTAGGCTGAAATGTAGAATATGCAATCTTTCCTACGATAAGATAGAAAGTCTGAAAAGACATGTGAGAAGAAAGCACGATAAGGGATCGTATTGTGAAGTGTGTAATAGACAGTTTGATACGAGAGAGTCGTACTTAAACCATTCTCACGTGAAAGCTATCAAAGAGTGTTCGATTTGCGGGTTAATTTTCGCATCTCAGGGTGGGTTAGCGAAACATATAAGATGTACGCACAAAATCGATACGCCCAAAGTAGCTTTTTGCAATatttgcaatgagggttttcatgATAGAAGGCTTTTGAAGCCTCATCTATTGAAGGTGCATTTAAAAGTGTCGTACACTTGTGTTTATTgcaataaagtttttaaagcTAAAGAGAGTTATAGGCGACACGTCTTATTTAAGCATCCGATGAATAATCCGTTGAACGTTAAAACGCAGAAGTGTGAGCAATGCTCGGAGACTTTTAGAGATGAATTTGAATTGTGCCGgcatattaattttgttcactGTAGGGATGCAGATGAGAAACTTCCTTTGTTGGATGTTAAGAAGGAGGATGCAGATGTTAAAGATGCATTCCAATGCACAAAGTGCCCGGAGATATATCAGACGTGGGAGACGTTGAAATTGCATTACGAGCAAAATCACCATTTGTCGGGTGAGACTCAGTGCCAAATCTGCGGAGAGATAATGCCAGGAGTAGAACTTCAGAAGCACATTAAGAATGTGCACACGGATAATGTTcctgtaaaatgtaaatattgtgaGTTCGAGACGTGTAATAAGGCTAGTATGACCCAACATGTTTTGCGGCACAAAAATGCAACGACTTTGCATTGTGACTTCCCGGGATGTAAATACAAGAGTTACTACGATGGTGCAATGCAGAAGCATAGGAAAAAGCATATAGAACAAGGAGTCAAATTGCAATGTACGAAGTGTCCGTTTCAAACGATGAATAAATACTTACTGAGGTACCACGAGGAAGCTCATATGACCGGTAAAAAACGATACAAGTGCGATCAATGTGACTACGCTACGATACTGCCAGCGAATTTGGTGCAACACAAATATAAGCATTCGAACGAGAAGCGGTTCAAGTGTGAGGTGTGCCCCTTCGCCACTAAGTACAATACCTCTCTGCGGTTTCACGTTAAGAAGAAACACTGTGATCTCCCGAGTTTCAATTGA
- Protein Sequence
- MVTIKEEIDIQIKKEYPDVKIKIEKNDDPLTRKDPTSFLPEEPMTYEIKEKKKKKKKKKKEQEDPFKDIEVDDKVFCMEPSLELKMDPEVNIKVENIEVELDFNDFANNTGLMVEGPQSEDSQEPIVKLEEQNREAVLLTFESVINEHTVLGYSEVKPAPTFMCKVCHLVFQTTKTLRMHQKRKHKIYRRAFKHICDYCGMSYEMKNSLIAHIRRKHGPNASPDDHEERTCEICALVFKGMARLRMHMRRKHGSFEDSFKHACSECGLTYDKYRSLIVHVQRKHTGKKPISNQWYNCPFCPKIFSRRETYTRHIQRKHKVSEEDAKKEVDGVSDLETSRNAETGEIICKECPLVFSSINFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDKGSYCEVCNRQFDTRESYLNHSHVKAIKECSICGLIFASQGGLAKHIRCTHKIDTPKVAFCNICNEGFHDRRLLKPHLLKVHLKVSYTCVYCNKVFKAKESYRRHVLFKHPMNNPLNVKTQKCEQCSETFRDEFELCRHINFVHCRDADEKLPLLDVKKEDADVKDAFQCTKCPEIYQTWETLKLHYEQNHHLSGETQCQICGEIMPGVELQKHIKNVHTDNVPVKCKYCEFETCNKASMTQHVLRHKNATTLHCDFPGCKYKSYYDGAMQKHRKKHIEQGVKLQCTKCPFQTMNKYLLRYHEEAHMTGKKRYKCDQCDYATILPANLVQHKYKHSNEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00961192;
- 90% Identity
- -
- 80% Identity
- -