Basic Information

Insect: Cydalima perspectalis
Gene Symbol: -
Assembly: GCA_951394215.1
Location: OX596229.1:3241716-3243895[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.53 41 5.4 0.2 1 23 65 87 65 87 0.95

2 17 7 5.4e+02 1.9 0.1 3 23 113 134 111 134 0.87

3 17 0.00049 0.039 14.9 2.8 1 23 156 178 156 178 0.99

4 17 0.0024 0.19 12.8 4.6 1 20 182 201 182 204 0.94

5 17 9e-05 0.007 17.3 0.1 1 23 209 232 209 232 0.96

6 17 0.012 0.97 10.5 2.6 1 23 238 261 238 261 0.96

7 17 3.6 2.8e+02 2.8 0.3 1 12 267 278 267 282 0.85

8 17 0.058 4.5 8.4 0.1 1 23 317 339 317 339 0.96

9 17 0.11 8.4 7.6 0.3 2 23 363 385 362 385 0.96

10 17 0.026 2.1 9.5 1.3 1 23 407 429 407 429 0.96

11 17 0.0011 0.086 13.9 0.2 3 23 435 455 434 455 0.95

12 17 0.0054 0.42 11.7 0.9 1 23 463 486 463 486 0.93

13 17 0.017 1.3 10.1 0.5 1 23 492 515 492 515 0.96

14 17 0.073 5.7 8.1 2.4 1 23 521 544 521 544 0.96

15 17 2.3e-05 0.0018 19.1 0.2 1 23 550 572 550 572 0.97

16 17 4.5e-06 0.00035 21.4 0.7 1 23 578 600 578 600 0.99

17 17 0.00027 0.021 15.8 6.2 1 23 606 628 606 629 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.53	41	5.4	0.2	1	23	65	87	65	87	0.95
2	17	7	5.4e+02	1.9	0.1	3	23	113	134	111	134	0.87
3	17	0.00049	0.039	14.9	2.8	1	23	156	178	156	178	0.99
4	17	0.0024	0.19	12.8	4.6	1	20	182	201	182	204	0.94
5	17	9e-05	0.007	17.3	0.1	1	23	209	232	209	232	0.96
6	17	0.012	0.97	10.5	2.6	1	23	238	261	238	261	0.96
7	17	3.6	2.8e+02	2.8	0.3	1	12	267	278	267	282	0.85
8	17	0.058	4.5	8.4	0.1	1	23	317	339	317	339	0.96
9	17	0.11	8.4	7.6	0.3	2	23	363	385	362	385	0.96
10	17	0.026	2.1	9.5	1.3	1	23	407	429	407	429	0.96
11	17	0.0011	0.086	13.9	0.2	3	23	435	455	434	455	0.95
12	17	0.0054	0.42	11.7	0.9	1	23	463	486	463	486	0.93
13	17	0.017	1.3	10.1	0.5	1	23	492	515	492	515	0.96
14	17	0.073	5.7	8.1	2.4	1	23	521	544	521	544	0.96
15	17	2.3e-05	0.0018	19.1	0.2	1	23	550	572	550	572	0.97
16	17	4.5e-06	0.00035	21.4	0.7	1	23	578	600	578	600	0.99
17	17	0.00027	0.021	15.8	6.2	1	23	606	628	606	629	0.95

Sequence Information

Coding Sequence: ATGAACTGTGGAACAGTTGGCGAATTCAAAtgggtttatttttttatagggcCTGCGGACGTTCCACGGGACAAAGAACTGTCCGTTACAGTTAAGTGGAAGCGCAAGCGACGAGTCGAGGAAGACAAAGCCAACGCCGCTTTGATCCTGCAGTACTCGAATGCAATGCCCTTTAGGTGCCAACGGGGGAAATTCATGTGCGCCTACTGCCGAACTATCAGTCCAAGTATAACAGACCTGAGGACACACTCCTCTATCCATGATAAACTTGAAATCTTTGAGAACCCAGACATAAGAATCTCATTTCCTTTACGCATTGATATAACAGATTTGGCGTGTGCAATATGTCATGAAGCTGTGCTAACAATTAAGGATTTGAAGAGCCACTTGAGTGGAGTTCACGAGAAATCGGCTGATTCCGATTACAGCGATGGGGTCATACCGTTTATCCTTACTGACAAAGAGTATAGATGCGTGCATTGCGGGTCAATGTTTGAAAGGTTCATGTCTCTCTTCGTGCATATGAATAAGCATTATCAGAGTCACGTATGTCCCACGTGTGGGAAGGGATTTTCCGGAAGGCACAAGCTTCGATCCCATTTGACTTGCCACGAGTCTGGCCAGTTCGCGTGCCCGAAATGCGATCTAGTGTTTATTAATCGGGCTTCTAAGAACAGGCACATGTCTGTGGGTCATGGTAGGAAGGAGAGATATCGATGCCCAGTTTGTGACGCTCATTTCGACTCGTACCATTCCCGGTTGAGGCATTTAGATAAAATCCACGGACAGAAAGTGGAGTATCGGTGTAAATTGTGCCCTTCAGTGTTCGgctccgccgacttcaaaataaagtGGAAGCCAAGACGCAAGTTTAACGATCACAGAGACAATGCGGCCATTATTATTGAGTGTTCGAACGCGTGTCCGTTTCGATGGAAACGGGGAACGTTCACTTGTGCCTTCTGCCCTCTCTCTTTCGGGGATCTTAAAGCAGTCAAGGATCATACACTTGAGCACCCTAATAGGATCGAAGCTATGCGCTTTGCCAGGCCTTATGATAACGTCAAAGTTGACGTCACTGATCTTAGATGCGAGCTGTGTCTCCAAACCATTAAAGACGTAAATACTCTCAAAGAACACCTTCGCATTACTCATGGAAAACCGATTAAACCAGAAGTCGATGCGGGCGTAACGCCCTTTCTATCCGATGGCAAAAATTTCATATGTACGCACTGTGGCGAAATATTCGAGTTGTTCACGAAAATCAACACTCATATCAACCAGCATTATcctaataatatatgttttgaaTGTGGTAAAGCGTTTTCCGCAGCACATAGACTTAAAGCTCATCTCGTGATACACGAAGCTGCGAATACATCAGAACACAAATGTAACAAATGCAGCCAAGTGTTCGCGACTCGCGTGCTCCGAAACAGTCACATAGCGTTAGTTCACGGTCCCGAATACAGATACAGATGTCCGTATTGCAAAGATTCGTTTAAAGGCTACGGGGATAGGGCGAAACATTTGAAGGAGGCTCATGGGAGGAAGGTTGAGTATCCTTGCCACTTGTGCTCGGCGGTGTTCGCTATGTGCAACCAGAGGACGAAGCATATACAACAAGTCCATATACGCTTGAAGCAGTTCTACTGCCCACTATGCCCGTTTCAGTTCGTAACGGCGGCACAATTAAAGAACCATATGGTTAAACACGTAGGGGAAAGAAATTTCCAATGTGAGGTTTGCAAAAAGGCTTATCCTCGAATGAAGACTTTGAAGGAACACATGCGTATACACAATAACGATAAGAGGTTTGTGTGCGAGTACTGCAACCACGCTTTCGTCCAGAAATGCAGTCTCAAAAGCCATTTAAGAGCGCACCATCCCACTGCTGACCCTTTAAAGAAAATACGACTGCCGAACGCGTATTAA
Protein Sequence: MNCGTVGEFKWVYFFIGPADVPRDKELSVTVKWKRKRRVEEDKANAALILQYSNAMPFRCQRGKFMCAYCRTISPSITDLRTHSSIHDKLEIFENPDIRISFPLRIDITDLACAICHEAVLTIKDLKSHLSGVHEKSADSDYSDGVIPFILTDKEYRCVHCGSMFERFMSLFVHMNKHYQSHVCPTCGKGFSGRHKLRSHLTCHESGQFACPKCDLVFINRASKNRHMSVGHGRKERYRCPVCDAHFDSYHSRLRHLDKIHGQKVEYRCKLCPSVFGSADFKIKWKPRRKFNDHRDNAAIIIECSNACPFRWKRGTFTCAFCPLSFGDLKAVKDHTLEHPNRIEAMRFARPYDNVKVDVTDLRCELCLQTIKDVNTLKEHLRITHGKPIKPEVDAGVTPFLSDGKNFICTHCGEIFELFTKINTHINQHYPNNICFECGKAFSAAHRLKAHLVIHEAANTSEHKCNKCSQVFATRVLRNSHIALVHGPEYRYRCPYCKDSFKGYGDRAKHLKEAHGRKVEYPCHLCSAVFAMCNQRTKHIQQVHIRLKQFYCPLCPFQFVTAAQLKNHMVKHVGERNFQCEVCKKAYPRMKTLKEHMRIHNNDKRFVCEYCNHAFVQKCSLKSHLRAHHPTADPLKKIRLPNAY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00752301;
90% Identity: -
80% Identity: -