Cper023076.1
Basic Information
- Insect
- Cydalima perspectalis
- Gene Symbol
- -
- Assembly
- GCA_951394215.1
- Location
- OX596229.1:3207465-3212833[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.037 2.9 9.0 0.9 1 22 92 113 92 115 0.89 2 19 0.025 1.9 9.6 1.6 1 23 142 165 142 165 0.95 3 19 0.0088 0.69 11.0 3.5 1 23 186 208 186 208 0.96 4 19 0.4 31 5.8 0.7 1 21 213 233 213 235 0.90 5 19 0.00068 0.053 14.5 0.5 1 23 240 263 240 263 0.98 6 19 0.12 9.7 7.4 5.0 1 23 269 292 269 292 0.95 7 19 0.13 10 7.3 1.3 1 23 299 322 299 322 0.97 8 19 0.053 4.1 8.6 0.1 1 23 328 350 328 350 0.97 9 19 0.45 35 5.6 0.3 1 14 356 369 356 370 0.86 10 19 0.054 4.2 8.5 0.5 1 23 416 439 416 439 0.92 11 19 2 1.6e+02 3.6 0.3 1 23 467 490 467 490 0.90 12 19 9.1e-05 0.0071 17.3 0.7 1 23 511 533 511 533 0.97 13 19 0.0061 0.48 11.5 0.1 1 23 537 559 537 559 0.96 14 19 0.00027 0.021 15.8 0.6 1 23 564 587 564 587 0.97 15 19 0.031 2.4 9.3 1.5 2 23 594 616 593 616 0.97 16 19 3.2e-07 2.5e-05 25.0 1.3 1 23 623 646 623 646 0.96 17 19 0.037 2.9 9.1 3.2 1 20 652 671 652 674 0.92 18 19 1.1e-05 0.00086 20.1 4.1 1 23 680 702 680 702 0.98 19 19 3.1e-06 0.00024 21.9 3.6 1 23 708 730 708 731 0.96
Sequence Information
- Coding Sequence
- ATGGTGGAGAAAAATGGAACGCGATGTGGTAAACGCGTCATTTTTCCAGCTCCGCCATGCATGCGCCGAAGTGTTGTTGACACTGTAGCGCAGTTACGTGAAGACGACGCGATGGACACGGCCATAATGCGCACGTGTTACATCAAAGTGAAGAAAGAGAGTGAGTTCAAGTGGGTCGTGGGAGATCCGACCGAAAAGGAAATCGCTAGGCATTCAGCCGTCTCCATTATCAGTGGCTCTAGCGCTTGTCCCTTTAGGTGGTTATTGcattcatacaaatgtttttattgcaaCGAGAAATATGTAGAATTCTCGAAGTTGGAGGAACACAATTTGGCCGAGCACAACGTTGACGAAGCGCGGATACTGAAAGCCATAATAAGCCTTGGCAGATACGAAAGGGTCAAAGTGAATTTCTCGAGTTTCTTCTGCAAACTGTGCGGTCATGACGCGAAGAATTACTCCAAGCTGAAAGAGCATCTTATAATTAGCCACAACAAGAAAATCGACGTAGAAATTGACGGGTTAATCCCATACCAAATTGTGGGTGATAAGCATATTTGCGTTTTTTGCTACCAAAATTTCAGGAACTACAGTATGTTGAATAAACACGCCAAGAGTCATATAGTGAATCCGTTTCTATGCGAACAGTGTGGTGTGAAGTTTCTAAACGCAAGAGATCTTGCTGCCCACGTCAAGTGCCACGAAACGGGTAAATTCAAGTGCGAaatttgcaataaagaattgaAGAATGCTGGCTCAAAGAAATCTCATATCCAACGGGTTCATATGCAGATTAAGAGGCATAGATGTCCGCATTGCTATGAAGTGTTTATGGATTACAGGCACAGACAGAGTCATATAGTGAAAGTTCACGGGCAGAAAGTTCCGGAGCACAAATGTCGGCTGTGTCCAAATACGTATCTTTACAGTGGACAGTTGAGAGCCCATGAGCGACGAGCGCACTTAAAGACTAGGAAGTATGTGTGTGAGGTATGTAAGAAACCGTGGCTGAACCAGGCTCTCCTGAGGAACCATATGGTCACTCATACGGGAGAGAAAAATCACGAATGCCCTGTCTGTAAGAAGAGATACGGTGACGCAAGCACATCGGGCGTGCGCGATAATCTTGTTAATGTCCTCTTCAATGTGTCGAGATGTCGGGACAGGCGAAGTGTCGATAGAAACAGCGCGGTCACTCTCATTCACAGCACATACGCGTGCCCTTTCAAGTTCTACAGGCTATTCATGTGTCTGTACTGCCGCAGCCAATTCGTTTCCATGTCCGAACTTGTTCGGCACACCTCCGACGAACATAGTTCATTGACCGAATTCGACATTCACCACGCTATCGTCAAGTTAGGCAAATGCCAGCCTATCAAAGTAAATATGATGAATTACAATTGTAAACTTTGCAATGACGAAATTGTTAACTTTGACGACTTGAAAAGCCATCTTGTGAATAAACATAGGAAACCGATCGATCCAGATAATGACGGAGTGTTGCCGTATAGGATATTAGAGGACGAGTACTCATGTGTGCTCTGTGATAAGACATTTGAGCAGTTTAGACTTTTGAATAGCCACATAAATGAACATTACACGAATTTTGTCTGCGATCAGTGTGGGACGGGGTTCGCGTCGGAGCTCCGTCTCAGAGCTCACGCGTCCTCCCACGAGTTTGGCCAATTCCCTTGCGATCAATGCGGGAAAGTGTTCAAAAAATTCGCCTCGAAACGGGAACACGTCAGATCGGTCCATATGAAGGAGAAGAGGAACAAATGCATGTTCTGTTTGGAGAGTTTCAGAGATTACTATCAGAAACAGAAGCATCTGTTGACTGTACATGGGATGGAGAAGAAACAATATAAGTGTAATTTCTGCGACAGGACTTTCGTGACAAGTTCTAATTTGAGGGCTCACGAGAGAGAGAATCATCTAAAGATTAACACATACATGTGTGACACTTGCGATTATAAATCTTTCAGCAAGTATGCATTAACGCGCCATTTGATTTGCCACACGGATGAGAAGAATCATAAATGCCAAATTTGTAAAAAGACTTACGCTAGGAGGAAGACTTTGACTGAGCATATGAAGATACATAATAATGATAGGAGATTTGTGTGTCCATACTGTGATAGGGCTTTTGTGCAGAAATGCAGTTTGAAAGGGCATTTGAGAACGCATCATAAAGACATATCAAATACGCAatgttga
- Protein Sequence
- MVEKNGTRCGKRVIFPAPPCMRRSVVDTVAQLREDDAMDTAIMRTCYIKVKKESEFKWVVGDPTEKEIARHSAVSIISGSSACPFRWLLHSYKCFYCNEKYVEFSKLEEHNLAEHNVDEARILKAIISLGRYERVKVNFSSFFCKLCGHDAKNYSKLKEHLIISHNKKIDVEIDGLIPYQIVGDKHICVFCYQNFRNYSMLNKHAKSHIVNPFLCEQCGVKFLNARDLAAHVKCHETGKFKCEICNKELKNAGSKKSHIQRVHMQIKRHRCPHCYEVFMDYRHRQSHIVKVHGQKVPEHKCRLCPNTYLYSGQLRAHERRAHLKTRKYVCEVCKKPWLNQALLRNHMVTHTGEKNHECPVCKKRYGDASTSGVRDNLVNVLFNVSRCRDRRSVDRNSAVTLIHSTYACPFKFYRLFMCLYCRSQFVSMSELVRHTSDEHSSLTEFDIHHAIVKLGKCQPIKVNMMNYNCKLCNDEIVNFDDLKSHLVNKHRKPIDPDNDGVLPYRILEDEYSCVLCDKTFEQFRLLNSHINEHYTNFVCDQCGTGFASELRLRAHASSHEFGQFPCDQCGKVFKKFASKREHVRSVHMKEKRNKCMFCLESFRDYYQKQKHLLTVHGMEKKQYKCNFCDRTFVTSSNLRAHERENHLKINTYMCDTCDYKSFSKYALTRHLICHTDEKNHKCQICKKTYARRKTLTEHMKIHNNDRRFVCPYCDRAFVQKCSLKGHLRTHHKDISNTQC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -