Cper022013.1
Basic Information
- Insect
- Cydalima perspectalis
- Gene Symbol
- -
- Assembly
- GCA_951394215.1
- Location
- OX596227.1:1785412-1790322[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.014 1.1 10.4 1.1 6 21 183 198 179 199 0.93 2 13 0.00056 0.044 14.8 0.5 2 23 216 237 215 237 0.97 3 13 0.0012 0.091 13.8 2.7 1 21 245 265 245 266 0.95 4 13 0.02 1.5 9.9 1.1 2 23 292 313 291 313 0.97 5 13 4.4e-05 0.0034 18.3 3.2 1 23 321 343 321 343 0.98 6 13 0.0006 0.047 14.7 3.5 1 23 351 374 351 374 0.97 7 13 3.1e-07 2.5e-05 25.0 3.3 1 23 411 433 411 433 0.98 8 13 2.2e-07 1.7e-05 25.5 0.9 1 23 439 461 439 461 0.96 9 13 1.1e-06 8.8e-05 23.3 0.6 1 23 467 489 467 489 0.99 10 13 1e-05 0.00079 20.3 0.5 1 23 495 517 495 517 0.98 11 13 5e-05 0.0039 18.1 0.2 1 23 523 545 523 545 0.98 12 13 5.5e-05 0.0043 18.0 2.1 1 21 551 571 551 573 0.96 13 13 5.4e-07 4.2e-05 24.3 0.4 1 23 579 601 579 601 0.98
Sequence Information
- Coding Sequence
- AtggaaataaatacaaatgcgAATTTCGACAAAATCTGCAGGACTTGCTTGCTCGAATCGTCTAGAATGGTGTCTCTAACGACCCAAATGGACGATGGCAAGCGTACAATGAACGATTTGTTGTTATTCGTGCTAAATAACAAAGTTACTGTGGGCCCGAAGTTCCCGCAACAAATTTGCGGGGACTGTGAAGCGTTGTTGTGCAAACTGGACGAATTCAAACGGCGCTGCCACGATTCGGAGAAGTTTTTGAAAGACATTCTCAACGTGAGCGATTTCGGCTCTGTACAAATTGTGAAGTTAGAATCGCCTTCTAAAGTGGAGAAGCGAACGTCTACTGACCATTATTTCGAAGTGGACTGTATAAATACAGCATTACCTAGCAAAGAAGATATAAATCTACAAATAGAAACAATTGAAAAAGATTCTAAGGTTGGTgtcaaaaatgtgataaagaAAGAGATAACTGACGATTTTTCCGACGGTTTCGATGACACATTCGATGATAACGATGAGTCTGACAACGTCGAGTCTTTCACATGTCCCTGCGGGAAGACTTTTACGAACTCCAAGGAGTACCATACACATCTTAACAGCAAGGACTGCGTTAAAACCTCGAGCAGCGATCTGTTATCAATTCCGGTGAAGTGTGAGAGATGCAACATAGTTTTCAAGAACACTAAGGCCTTTAAAATTCACGCTCGGATACATAGTAACACTAATCGCCCACTATTCTCATGTACGTTTTGTCGAAGGAAGTTCAAGAAGAAAACGAGTCTACAAGtgcatttaaacaataaaagttgtagaaaaTCAGTTGCTAACGTAAAGAAAGAAGAGTCTCAGAAGAAGAATGTACTATTAATCCCAGTGAAATGTGAATCATGCGATTTAGTGTTTCAGTCGATGAAATTGTTCAAATTACACTCTCGTACGCACCAAACGGAAAAACAAGAGCATTACCAATGTTCGTTGTGCACGAGGAAGTTTAAGAAGAAATCGTCACTCGTAATGCATTTAAAGAATCACGAAGACAGAGACAATGTGAAATACACATGTTCAACCTGCAAAAGAGAATTTAAATATCGTGCTCACTTAGATAATCACACAATGTCTGAACATAATTCAAAGGCCGGCATAAAACTATTAACATTATACCCTGTTCCGGAACAACCAGAAGGTGAAAATTTAGACAAAACGATGGCAGTTTCCATTTCTGCGGAGAAGAAACACACTTGCAAGCTCTGCGGTAAATCGTTCACGATGCTGTCAACTTTGACGGATCATATGCGCACGCACACTGGTGAGAGGCCGTTCTTGTGTTCGGTGTGCGGGAGAGGCTTCACACAGAAGACGAATTTAGCGCAGCACATGAGGAGGCATTTAGGAGTTAAGCCATTCACGTGTAGTGAATGTGATAGGCGATTCGTGTCCAAAGGCGAGCTGGACGCTCACCAGCGCAAGCACTCCGGCGCGCACCCGTTCGTGTGCGACGCGTGCGGCAACGGGTTCACCACGTCCTCGTCGCTGCGCAAGCACAAGCGCGTGCACACCGGCGAGCGGCCCTACGCGTGCGACCTGTGCCCCATGCGCTTCGCCGTCTCGGGCACCCTCAAGAGCCACCGGCGCACGCACACCGGCGAGAAGCCCTACCAGTGCTCGTACTGCGAGAAGGCGTTCGTGCAGCGGCAGGACCTCGTGTCGCACATCCGCTGCCACACCGGCGAGCGGCCCTTCGTCTGCGCGCACTGCGGACAGGCGTTCCGCAAGCCGTCGGCGCTAAAGGCGCACGTGAAGACGCACAAGCCGCCCGCGCCGTCGCTGCAGCCGCTGCAGCCGCTCGGCCTGCTGCACGCGCTGCACGGCGCCTCCTAG
- Protein Sequence
- MEINTNANFDKICRTCLLESSRMVSLTTQMDDGKRTMNDLLLFVLNNKVTVGPKFPQQICGDCEALLCKLDEFKRRCHDSEKFLKDILNVSDFGSVQIVKLESPSKVEKRTSTDHYFEVDCINTALPSKEDINLQIETIEKDSKVGVKNVIKKEITDDFSDGFDDTFDDNDESDNVESFTCPCGKTFTNSKEYHTHLNSKDCVKTSSSDLLSIPVKCERCNIVFKNTKAFKIHARIHSNTNRPLFSCTFCRRKFKKKTSLQVHLNNKSCRKSVANVKKEESQKKNVLLIPVKCESCDLVFQSMKLFKLHSRTHQTEKQEHYQCSLCTRKFKKKSSLVMHLKNHEDRDNVKYTCSTCKREFKYRAHLDNHTMSEHNSKAGIKLLTLYPVPEQPEGENLDKTMAVSISAEKKHTCKLCGKSFTMLSTLTDHMRTHTGERPFLCSVCGRGFTQKTNLAQHMRRHLGVKPFTCSECDRRFVSKGELDAHQRKHSGAHPFVCDACGNGFTTSSSLRKHKRVHTGERPYACDLCPMRFAVSGTLKSHRRTHTGEKPYQCSYCEKAFVQRQDLVSHIRCHTGERPFVCAHCGQAFRKPSALKAHVKTHKPPAPSLQPLQPLGLLHALHGAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -